Deprecated API

Contents

• Methods

Deprecated Methods

Method	Description
fr.igred.omero.AnnotatableWrapper.addFileAnnotation(Client, FileAnnotationWrapper)	Links a file annotation to the object. Use AnnotatableWrapper.link(fr.igred.omero.Client, A) instead.
fr.igred.omero.AnnotatableWrapper.addMapAnnotation(Client, MapAnnotationWrapper)	Adds a List of Key-Value pair to the object. Use AnnotatableWrapper.link(fr.igred.omero.Client, A) instead. The list is contained in the map annotation.
fr.igred.omero.AnnotatableWrapper.addPairKeyValue(Client, String, String)	Adds a single Key-Value pair to the object.
fr.igred.omero.AnnotatableWrapper.addTag(Client, TagAnnotationWrapper)	Adds a tag to the object in OMERO, if possible. Use AnnotatableWrapper.link(fr.igred.omero.Client, A) instead.
fr.igred.omero.AnnotatableWrapper.addTags(Client, TagAnnotationWrapper...)	Adds multiple tag to the object in OMERO, if possible. Use AnnotatableWrapper.link(Client, GenericAnnotationWrapper[]) instead.
fr.igred.omero.annotations.FileAnnotationWrapper.asFileAnnotationData()	Gets the FileAnnotationData contained.
fr.igred.omero.annotations.MapAnnotationWrapper.asMapAnnotationData()	Gets the MapAnnotationData contained. Use GenericObjectWrapper.asDataObject() instead.
fr.igred.omero.annotations.TagAnnotationWrapper.asTagAnnotationData()	Gets the TagAnnotationData contained. Use GenericObjectWrapper.asDataObject() instead.
fr.igred.omero.Browser.getImagesKey(String)	Gets all images with a certain key
fr.igred.omero.Browser.getImagesPairKeyValue(String, String)	Gets all images with a certain key value pair from OMERO
fr.igred.omero.Browser.getImagesTagged(TagAnnotationWrapper)	Gets all images tagged with a specified tag from OMERO.
fr.igred.omero.Browser.getImagesTagged(Long)	Gets all images tagged with a specified tag from OMERO.
fr.igred.omero.Client.delete(TableWrapper)	Deletes a table from OMERO.
fr.igred.omero.Client.getImagesKey(String)	Gets all images with a certain key
fr.igred.omero.Client.getImagesPairKeyValue(String, String)	Gets all images with a certain key value pair from OMERO
fr.igred.omero.exception.ExceptionHandler.handleException(String)	Throws: AccessException if DSAccessException was caught ServiceException if DSOutOfServiceException was caught The appropriate exception if ServerError was caught (see ExceptionHandler.handleOMEROException(java.lang.Throwable, java.lang.String))
fr.igred.omero.exception.ExceptionHandler.handleException(Throwable, String)	Helper method to convert an exception from: DSAccessException to AccessException DSOutOfServiceException to ServiceException ServerError to OMEROServerError
fr.igred.omero.exception.ExceptionHandler.handleServiceOrAccess(String)	Throws: ServiceException if DSOutOfServiceException was caught AccessException if DSAccessException was caught
fr.igred.omero.exception.ExceptionHandler.handleServiceOrAccess(Throwable, String)	Helper method to convert an exception from: DSOutOfServiceException to ServiceException DSAccessException to AccessException
fr.igred.omero.exception.ExceptionHandler.handleServiceOrServer(String)	Throws: ServiceException if DSOutOfServiceException was caught OMEROServerError if ServerError was caught
fr.igred.omero.exception.ExceptionHandler.handleServiceOrServer(Throwable, String)	Helper method to convert an exception from: DSOutOfServiceException to ServiceException ServerError to OMEROServerError
fr.igred.omero.meta.ExperimenterWrapper.asExperimenterData()	Returns the ExperimenterData contained. Use GenericObjectWrapper.asDataObject() instead.
fr.igred.omero.meta.GroupWrapper.asGroupData()	Returns the GroupData contained. Use GenericObjectWrapper.asDataObject() instead.
fr.igred.omero.meta.PlaneInfoWrapper.asPlaneInfoData()	Returns the PlaneInfoData contained. Use GenericObjectWrapper.asDataObject() instead.
fr.igred.omero.repository.ChannelWrapper.asChannelData()	Returns the ChannelData contained. Use GenericObjectWrapper.asDataObject() instead.
fr.igred.omero.repository.DatasetWrapper.asDatasetData()	Returns the DatasetData contained. Use GenericObjectWrapper.asDataObject() instead.
fr.igred.omero.repository.DatasetWrapper.getImagesKey(Client, String)	Gets all images in the dataset with a certain key
fr.igred.omero.repository.DatasetWrapper.getImagesPairKeyValue(Client, String, String)	Gets all images in the dataset with a certain key value pair from OMERO
fr.igred.omero.repository.FolderWrapper.addROI(Client, ROIWrapper)	Adds an ROI to the folder and associate it to the image id set(an image need to be associated)
fr.igred.omero.repository.FolderWrapper.asFolderData()	Gets the folder contained in the FolderWrapper. Use GenericObjectWrapper.asDataObject() instead.
fr.igred.omero.repository.FolderWrapper.getROIs(Client)	Gets the ROI contained in the folder associated with the image id set (an image need to be associated)
fr.igred.omero.repository.FolderWrapper.reload(Client)	Reloads the folder from OMERO, to update all links.
fr.igred.omero.repository.FolderWrapper.setImage(long)	Sets the image associated to the folder
fr.igred.omero.repository.FolderWrapper.setImage(ImageWrapper)	Sets the image associated to the folder
fr.igred.omero.repository.FolderWrapper.unlinkAllROI(Client)	Unlink all ROI, associated to the image set, in the folder. ROIs are now linked to the image directly
fr.igred.omero.repository.FolderWrapper.unlinkROI(Client, ROIWrapper)	Unlink an ROI, associated to the image set, in the folder. The ROI is now linked to the image directly.
fr.igred.omero.repository.GenericRepositoryObjectWrapper.refresh(Client)	Reloads the object from OMERO.
fr.igred.omero.repository.ImageWrapper.asImageData()	Returns the ImageData contained. Use GenericObjectWrapper.asDataObject() instead.
fr.igred.omero.repository.ImageWrapper.getFolder(Client, Long)	Gets the folder with the specified id on OMERO.
fr.igred.omero.repository.ImageWrapper.saveROI(Client, ROIWrapper)	Links a ROI to the image in OMERO DO NOT USE IT IF A SHAPE WAS DELETED !!!
fr.igred.omero.repository.PlateAcquisitionWrapper.asPlateAcquisitionData()	Returns the PlateAcquisitionData contained. Use GenericObjectWrapper.asDataObject() instead.
fr.igred.omero.repository.PlateWrapper.asPlateData()	Returns the PlateData contained. Use GenericObjectWrapper.asDataObject() instead.
fr.igred.omero.repository.ProjectWrapper.asProjectData()	Returns the ProjectData contained. Use GenericObjectWrapper.asDataObject() instead.
fr.igred.omero.repository.ProjectWrapper.getImagesKey(Client, String)	Gets all images in the project with a certain key
fr.igred.omero.repository.ProjectWrapper.getImagesPairKeyValue(Client, String, String)	Gets all images in the project with a certain key value pair from OMERO.
fr.igred.omero.repository.ScreenWrapper.asScreenData()	Returns the ScreenData contained. Use GenericObjectWrapper.asDataObject() instead.
fr.igred.omero.repository.ScreenWrapper.refresh(GatewayWrapper)	Reloads the screen from OMERO.
fr.igred.omero.repository.WellSampleWrapper.asWellSampleData()	Returns the WellSampleData contained. Use GenericObjectWrapper.asDataObject() instead.
fr.igred.omero.repository.WellWrapper.asWellData()	Returns the WellData contained. Use GenericObjectWrapper.asDataObject() instead.
fr.igred.omero.roi.GenericShapeWrapper.asShapeData()	Gets the ShapeData object contained.
fr.igred.omero.roi.ROIWrapper.asROIData()	Returns the ROIData contained. Use GenericObjectWrapper.asDataObject() instead.
fr.igred.omero.roi.ROIWrapper.setData(ROIData)	Changes the wrapped data.