Package fr.igred.omero.roi

Class MaskWrapper

java.lang.Object

fr.igred.omero.GenericObjectWrapper<T>

fr.igred.omero.AnnotatableWrapper<T>

fr.igred.omero.roi.GenericShapeWrapper<MaskData>

fr.igred.omero.roi.MaskWrapper

public class MaskWrapper
extends GenericShapeWrapper<MaskData>

Class containing an MaskData.

Wraps function calls to the MaskData contained.

Field Summary

Fields inherited from class fr.igred.omero.roi.GenericShapeWrapper

ANNOTATION_LINK, IJ_ID_PROPERTY

Fields inherited from class fr.igred.omero.GenericObjectWrapper

data

Constructor Summary

Constructors

Constructor	Description
MaskWrapper()	Constructor of the MaskWrapper class using a new empty MaskData.
MaskWrapper(double x, double y, double width, double height, byte[] mask)	Constructor of the MaskWrapper class using a new MaskData.
MaskWrapper(ImageRoi imageRoi)	Constructor of the MaskWrapper class using an ImageJ ImageRoi.
MaskWrapper(MaskData mask)	Constructor of the MaskWrapper class using a MaskData.

Method Summary

Modifier and Type	Method	Description
double[]	getCoordinates()	Gets the coordinates of the MaskData shape.
double	getHeight()	Returns the height of the mask.
byte[]	getMask()	Returns the mask as a byte array.
int[][]	getMaskAsBinaryArray()	Returns the mask image.
BufferedImage	getMaskAsBufferedImage()	Returns the mask image.
String	getText()	Gets the text on the ShapeData.
double	getWidth()	Returns the width of the mask.
double	getX()	Returns the x-coordinate of the top-left corner of the mask.
double	getY()	Returns the y-coordinate of the top-left corner of the mask.
void	setCoordinates(double[] coordinates)	Sets the coordinates of the MaskData shape.
void	setCoordinates(double x, double y, double width, double height)	Sets the coordinates of the MaskData shape.
void	setHeight(double height)	Sets the height of an untransformed mask.
void	setMask(boolean[][] mask)	Sets the mask
void	setMask(byte[] mask)	Sets the mask image.
void	setMask(int[][] mask)	Sets the mask
void	setText(String text)	Sets the text on the ShapeData.
void	setWidth(double width)	Sets the width of an untransformed mask.
void	setX(double x)	Sets the x-coordinate top-left corner of an untransformed mask.
void	setY(double y)	Sets the y-coordinate top-left corner of an untransformed mask.
Shape	toAWTShape()	Converts the shape to an Shape.
Roi	toImageJ()	Converts shape to ImageJ ROI.

Methods inherited from class fr.igred.omero.roi.GenericShapeWrapper

annotationLinkType, asShapeData, copyFromIJRoi, copyToIJRoi, createTransformedAWTShape, getBoundingBox, getC, getFill, getFontSize, getStroke, getT, getZ, link, setC, setCZT, setFill, setFontSize, setStroke, setT, setTransform, setTransform, setZ, toAWTTransform

Methods inherited from class fr.igred.omero.AnnotatableWrapper

addAndReplaceFile, addAndReplaceFile, addAndReplaceTable, addAndReplaceTable, addFile, addFileAnnotation, addKeyValuePair, addMapAnnotation, addPairKeyValue, addTable, addTag, addTag, addTag, addTags, addTags, copyAnnotationLinks, getAnnotations, getFileAnnotations, getKeyValuePairs, getMapAnnotations, getMyRating, getRatings, getTable, getTables, getTags, getValue, isLinked, link, link, linkIfNotLinked, rate, removeLink, removeLinks, unlink, unlink

Methods inherited from class fr.igred.omero.GenericObjectWrapper

asDataObject, canAnnotate, canChgrp, canChown, canDelete, canEdit, canLink, distinct, flatten, getCreated, getGroupId, getId, getOwner, getUpdated, saveAndUpdate, toString, wrap, wrap

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

MaskWrapper

public MaskWrapper(MaskData mask)

Constructor of the MaskWrapper class using a MaskData.

Parameters:

mask - The MaskData to wrap.

MaskWrapper

public MaskWrapper()

Constructor of the MaskWrapper class using a new empty MaskData.

MaskWrapper

public MaskWrapper(ImageRoi imageRoi)

Constructor of the MaskWrapper class using an ImageJ ImageRoi.

Parameters:

imageRoi - An ImageJ ImageRoi.

MaskWrapper

public MaskWrapper(double x,
                   double y,
                   double width,
                   double height,
                   byte[] mask)

Constructor of the MaskWrapper class using a new MaskData.

Parameters:

x - The x-coordinate of the top-left corner of the image.

y - The y-coordinate of the top-left corner of the image.

width - The width of the image.

height - The height of the image.

mask - The mask image.

Method Detail

getText

public String getText()

Gets the text on the ShapeData.

Specified by:

getText in class GenericShapeWrapper<MaskData>

Returns:

the text

setText

public void setText(String text)

Sets the text on the ShapeData.

Specified by:

setText in class GenericShapeWrapper<MaskData>

Parameters:

text - the text

toAWTShape

public Shape toAWTShape()

Converts the shape to an Shape.

Specified by:

toAWTShape in class GenericShapeWrapper<MaskData>

Returns:

The converted AWT Shape.

getX

public double getX()

Returns the x-coordinate of the top-left corner of the mask.

Returns:

See above.

setX

public void setX(double x)

Sets the x-coordinate top-left corner of an untransformed mask.

Parameters:

x - The value to set.

getY

public double getY()

Returns the y-coordinate of the top-left corner of the mask.

Returns:

See above.

setY

public void setY(double y)

Sets the y-coordinate top-left corner of an untransformed mask.

Parameters:

y - See above.

getWidth

public double getWidth()

Returns the width of the mask.

Returns:

See above.

setWidth

public void setWidth(double width)

Sets the width of an untransformed mask.

Parameters:

width - See above.

getHeight

public double getHeight()

Returns the height of the mask.

Returns:

See above.

setHeight

public void setHeight(double height)

Sets the height of an untransformed mask.

Parameters:

height - See above.

getMaskAsBinaryArray

public int[][] getMaskAsBinaryArray()

Returns the mask image.

Returns:

See above.

getMaskAsBufferedImage

public BufferedImage getMaskAsBufferedImage()

Returns the mask image.

Returns:

See above.

getMask

public byte[] getMask()

Returns the mask as a byte array.

Returns:

See above.

setMask

public void setMask(byte[] mask)

Sets the mask image.

Parameters:

mask - See above.

setMask

public void setMask(int[][] mask)

Sets the mask

Parameters:

mask - The binary mask (int[width][height])

setMask

public void setMask(boolean[][] mask)

Sets the mask

Parameters:

mask - The binary mask (boolean[width][height])

setCoordinates

public void setCoordinates(double x,
                           double y,
                           double width,
                           double height)

Sets the coordinates of the MaskData shape.

Parameters:

x - The x-coordinate of the top-left corner.

y - The y-coordinate of the top-left corner.

width - The width of the rectangle.

height - The height of the rectangle.

getCoordinates

public double[] getCoordinates()

Gets the coordinates of the MaskData shape.

Returns:

Array of coordinates containing {X,Y,Width,Height}.

setCoordinates

public void setCoordinates(double[] coordinates)

Sets the coordinates of the MaskData shape.

Parameters:

coordinates - Array of coordinates containing {X,Y,Width,Height}.

toImageJ

public Roi toImageJ()

Converts shape to ImageJ ROI.

Overrides:

toImageJ in class GenericShapeWrapper<MaskData>

Returns:

An ImageJ ROI.