Uses of Class
fr.igred.omero.roi.ROIWrapper
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Packages that use ROIWrapper Package Description fr.igred.omero.repository This package contains classes related to the hierarchical organization for images.fr.igred.omero.roi This package contains wrapper classes for OMERO shapes and ROIs. -
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Uses of ROIWrapper in fr.igred.omero.repository
Methods in fr.igred.omero.repository that return types with arguments of type ROIWrapper Modifier and Type Method Description List<ROIWrapper>
FolderWrapper. getROIs(Client client)
Deprecated.Gets the ROI contained in the folder associated with the image id set (an image need to be associated)List<ROIWrapper>
FolderWrapper. getROIs(Client client, long imageId)
Gets the ROIs contained in the folder associated with the provided image ID.List<ROIWrapper>
FolderWrapper. getROIs(Client client, ImageWrapper image)
Gets the ROIs contained in the folder associated with the provided image.List<ROIWrapper>
ImageWrapper. getROIs(Client client)
Gets all ROIs linked to the image in OMEROList<ROIWrapper>
ImageWrapper. saveROIs(Client client, ROIWrapper... rois)
Links ROIs to the image in OMERO.List<ROIWrapper>
ImageWrapper. saveROIs(Client client, Collection<? extends ROIWrapper> rois)
Links ROIs to the image in OMERO.Methods in fr.igred.omero.repository with parameters of type ROIWrapper Modifier and Type Method Description void
FolderWrapper. addROI(Client client, ROIWrapper roi)
Deprecated.Adds an ROI to the folder and associate it to the image id set(an image need to be associated)void
FolderWrapper. addROIs(Client client, long imageId, ROIWrapper... rois)
Adds ROIs to the folder and associate them to the provided image ID.void
FolderWrapper. addROIs(Client client, ImageWrapper image, ROIWrapper... rois)
Adds ROIs to the folder and associate them to the provided image.void
ImageWrapper. saveROI(Client client, ROIWrapper roi)
Deprecated.Links a ROI to the image in OMEROList<ROIWrapper>
ImageWrapper. saveROIs(Client client, ROIWrapper... rois)
Links ROIs to the image in OMERO.ImagePlus
ImageWrapper. toImagePlus(Client client, ROIWrapper roi)
Gets the ImagePlus from the image, but only inside the ROI.void
FolderWrapper. unlinkROI(Client client, ROIWrapper roi)
Deprecated.Unlink an ROI, associated to the image set, in the folder.void
FolderWrapper. unlinkROIs(Client client, ROIWrapper... rois)
Unlink ROIs from the folder.Method parameters in fr.igred.omero.repository with type arguments of type ROIWrapper Modifier and Type Method Description List<ROIWrapper>
ImageWrapper. saveROIs(Client client, Collection<? extends ROIWrapper> rois)
Links ROIs to the image in OMERO.void
FolderWrapper. unlinkROIs(Client client, Collection<? extends ROIWrapper> rois)
Unlink ROIs from the folder. -
Uses of ROIWrapper in fr.igred.omero.roi
Methods in fr.igred.omero.roi that return types with arguments of type ROIWrapper Modifier and Type Method Description static List<ROIWrapper>
ROIWrapper. fromImageJ(List<? extends Roi> ijRois)
Converts an ImageJ list of ROIs to a list of OMERO ROIsstatic List<ROIWrapper>
ROIWrapper. fromImageJ(List<? extends Roi> ijRois, String property)
Converts an ImageJ list of ROIs to a list of OMERO ROIsMethod parameters in fr.igred.omero.roi with type arguments of type ROIWrapper Modifier and Type Method Description static List<Roi>
ROIWrapper. toImageJ(Collection<? extends ROIWrapper> rois, String property, boolean groupRois)
Converts an OMERO list of ROIs to a list of ImageJ ROIsstatic List<Roi>
ROIWrapper. toImageJ(List<? extends ROIWrapper> rois)
Converts an OMERO list of ROIs to a list of ImageJ ROIsstatic List<Roi>
ROIWrapper. toImageJ(List<? extends ROIWrapper> rois, String property)
Converts an OMERO list of ROIs to a list of ImageJ ROIs
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