Uses of Interface
fr.igred.omero.core.Image

Packages that use Image

Package	Description
fr.igred.omero	This package contains the main interfaces and abstract classes to handle OME Remote Objects.
fr.igred.omero.annotations	This package contains interfaces and classes for handling annotations.
fr.igred.omero.client	This package contains the client interfaces used to interact with an OMERO server and a class implementing them.
fr.igred.omero.containers	This package contains interfaces and classes related to the hierarchical organization for images,
fr.igred.omero.core	This package contains interfaces and classes to handle images and their content, such as pixels, channels or planes.
fr.igred.omero.roi	This package contains wrapper classes for OMERO shapes and ROIs.
fr.igred.omero.screen	This package contains interfaces and classes related to the HCS organization, e.g.

Uses of Image in fr.igred.omero

Methods in fr.igred.omero that return types with arguments of type Image

Modifier and Type	Method	Description
java.util.List<Image>	ImageLinked.getImages(Browser browser)	Retrieves the images linked to this object, either directly, or through parents/children.

Uses of Image in fr.igred.omero.annotations

Methods in fr.igred.omero.annotations that return types with arguments of type Image

Modifier and Type	Method	Description
java.util.List<Image>	AnnotationWrapper.getImages(Browser browser)	Gets all images with this annotation from OMERO.

Uses of Image in fr.igred.omero.client

Methods in fr.igred.omero.client that return Image

Modifier and Type	Method	Description
default Image	Browser.getImage(java.lang.Long id)	Returns the image with the specified ID from OMERO.

Methods in fr.igred.omero.client that return types with arguments of type Image

Modifier and Type	Method	Description
default java.util.List<Image>	Browser.getImages()	Gets all images owned by the current user.
default java.util.List<Image>	Browser.getImages(Annotation annotation)	Gets all images with the specified annotation from OMERO.
default java.util.List<Image>	Browser.getImages(java.lang.Long... ids)	Gets the images with the specified ids from OMERO
default java.util.List<Image>	Browser.getImages(java.lang.String name)	Gets all images with a certain name from OMERO.
default java.util.List<Image>	Browser.getImages(java.lang.String projectName, java.lang.String datasetName, java.lang.String imageName)	Gets all images with the name specified inside projects and datasets with the given names.
default java.util.List<Image>	Browser.getImagesLike(java.lang.String motif)	Gets all images with a certain motif in their name from OMERO.
default java.util.List<Image>	Browser.getImagesWithKey(java.lang.String key)	Gets all images with a certain key.
default java.util.List<Image>	Browser.getImagesWithKeyValuePair(java.lang.String key, java.lang.String value)	Gets all images with a certain key value pair from OMERO

Uses of Image in fr.igred.omero.containers

Methods in fr.igred.omero.containers that return types with arguments of type Image

Modifier and Type	Method	Description
java.util.List<Image>	Dataset.getImages()	Gets all the images in the dataset (if it was properly loaded from OMERO).
java.util.List<Image>	Dataset.getImages(Browser browser)	Gets all images in the dataset available from OMERO.
default java.util.List<Image>	Dataset.getImages(Browser browser, java.lang.String name)	Gets all images in the dataset with a certain name from OMERO.
java.util.List<Image>	DatasetWrapper.getImages()	Gets all the images in the dataset (if it was properly loaded from OMERO).
java.util.List<Image>	DatasetWrapper.getImages(Browser browser)	Gets all images in the dataset available from OMERO.
java.util.List<Image>	Folder.getImages()	Retrieves the images contained in this folder.
default java.util.List<Image>	Folder.getImages(Browser browser)	Retrieves the images contained in this folder.
java.util.List<Image>	FolderWrapper.getImages()	Retrieves the images contained in this folder.
java.util.List<Image>	Project.getImages(Browser browser)	Gets all images in the project available from OMERO.
default java.util.List<Image>	Project.getImages(Browser browser, java.lang.String name)	Gets all images in the project with a certain name from OMERO.
default java.util.List<Image>	Project.getImages(Browser browser, java.lang.String datasetName, java.lang.String imageName)	Gets all images with a certain name from datasets with the specified name inside this project on OMERO.
java.util.List<Image>	ProjectWrapper.getImages(Browser browser)	Gets all images in the project available from OMERO.
default java.util.List<Image>	Dataset.getImagesLike(Browser browser, java.lang.String motif)	Gets all images in the dataset with a certain motif in their name from OMERO.
default java.util.List<Image>	Project.getImagesLike(Browser browser, java.lang.String motif)	Gets all images in the project with a certain motif in their name from OMERO.
default java.util.List<Image>	Dataset.getImagesTagged(Browser browser, TagAnnotation tag)	Gets all images in the dataset tagged with a specified tag from OMERO.
default java.util.List<Image>	Dataset.getImagesTagged(Browser browser, java.lang.Long tagId)	Gets all images in the dataset tagged with a specified tag from OMERO.
default java.util.List<Image>	Project.getImagesTagged(Browser browser, TagAnnotation tag)	Gets all images in the project tagged with a specified tag from OMERO.
default java.util.List<Image>	Project.getImagesTagged(Browser browser, java.lang.Long tagId)	Gets all images in the project tagged with a specified tag from OMERO.
default java.util.List<Image>	Dataset.getImagesWithKey(Browser browser, java.lang.String key)	Gets all images in the dataset with a certain key
default java.util.List<Image>	Project.getImagesWithKey(Browser browser, java.lang.String key)	Gets all images in the project with a certain key
default java.util.List<Image>	Dataset.getImagesWithKeyValuePair(Browser browser, java.lang.String key, java.lang.String value)	Gets all images in the dataset with a certain key value pair from OMERO
default java.util.List<Image>	Project.getImagesWithKeyValuePair(Browser browser, java.lang.String key, java.lang.String value)	Gets all images in the project with a certain key value pair from OMERO.
default java.util.List<Image>	Dataset.replaceImages(Client client, java.util.Collection<? extends Image> oldImages, Image newImage)	Replaces (and unlinks) a collection of images from this dataset by a new image, after copying their annotations and ROIs, and concatenating the descriptions (on new lines).

Methods in fr.igred.omero.containers with parameters of type Image

Modifier and Type	Method	Description
default void	Dataset.addImage(Client client, Image image)	Adds a single image to the dataset in OMERO
default void	Folder.addImages(DataManager dm, Image... images)	Links images to the folder in OMERO.
default void	Folder.addROIs(DataManager dm, Image image, ROI... rois)	Adds ROIs to the folder and associate them to the provided image.
default java.util.List<ROI>	Folder.getROIs(DataManager dm, Image image)	Gets the ROIs contained in the folder associated with the provided image.
void	Dataset.removeImage(Client client, Image image)	Removes an image from the dataset in OMERO.
void	DatasetWrapper.removeImage(Client client, Image image)	Removes an image from the dataset in OMERO.
default java.util.List<Image>	Dataset.replaceImages(Client client, java.util.Collection<? extends Image> oldImages, Image newImage)	Replaces (and unlinks) a collection of images from this dataset by a new image, after copying their annotations and ROIs, and concatenating the descriptions (on new lines).
default void	Folder.unlinkAllROIs(DataManager dm, Image image)	Unlink all ROIs associated to the provided image from the folder.

Method parameters in fr.igred.omero.containers with type arguments of type Image

Modifier and Type	Method	Description
default void	Dataset.addImages(Client client, java.lang.Iterable<? extends Image> images)	Adds a list of image to the dataset in OMERO.
default java.util.List<Image>	Dataset.replaceImages(Client client, java.util.Collection<? extends Image> oldImages, Image newImage)	Replaces (and unlinks) a collection of images from this dataset by a new image, after copying their annotations and ROIs, and concatenating the descriptions (on new lines).

Uses of Image in fr.igred.omero.core

Classes in fr.igred.omero.core that implement Image

Modifier and Type	Class	Description
class	ImageWrapper	Class containing an ImageData.

Methods in fr.igred.omero.core that return types with arguments of type Image

Modifier and Type	Method	Description
default java.util.List<Image>	Image.getFilesetImages(Browser browser)	Returns the list of images sharing the same fileset as the current image.
default java.util.List<Image>	Image.getImages(Browser browser)	Returns this image, updated from OMERO, as a singleton list.

Uses of Image in fr.igred.omero.roi

Methods in fr.igred.omero.roi with parameters of type Image

Modifier and Type	Method	Description
void	ROI.setImage(Image image)	Sets the image linked to the ROI.
void	ROIWrapper.setImage(Image image)	Sets the image linked to the ROI.

Uses of Image in fr.igred.omero.screen

Methods in fr.igred.omero.screen that return Image

Modifier and Type	Method	Description
Image	WellSample.getImage()	Returns the image related to that sample if any.
Image	WellSampleWrapper.getImage()	Returns the image related to that sample if any.

Methods in fr.igred.omero.screen that return types with arguments of type Image

Modifier and Type	Method	Description
default java.util.List<Image>	Plate.getImages(Browser browser)	Returns the images contained in the wells of this plate.
default java.util.List<Image>	PlateAcquisition.getImages(Browser browser)	Retrieves the images contained in the wells in the parent plate.
default java.util.List<Image>	Screen.getImages(Browser browser)	Retrieves the images contained in this screen.
default java.util.List<Image>	Well.getImages()	Retrieves the images contained in this well.
default java.util.List<Image>	Well.getImages(Browser browser)	Reloads this well and retrieves the images it contains.
default java.util.List<Image>	WellSample.getImages(Browser browser)	Retrieves the image contained in this Well Sample as a singleton list.

Methods in fr.igred.omero.screen with parameters of type Image

Modifier and Type	Method	Description
void	WellSample.setImage(Image image)	Sets the image linked to this well sample.
void	WellSampleWrapper.setImage(Image image)	Sets the image linked to this well sample.