Uses of Class
fr.igred.omero.repository.ImageWrapper

Packages that use ImageWrapper

Package	Description
fr.igred.omero	This package contains abstract wrapper classes for the OMERO Gateway and the basic OMERO object.
fr.igred.omero.annotations	This package contains wrapper classes for annotations.
fr.igred.omero.repository	This package contains classes related to the hierarchical organization for images.
fr.igred.omero.roi	This package contains wrapper classes for OMERO shapes and ROIs.

Uses of ImageWrapper in fr.igred.omero

Methods in fr.igred.omero that return ImageWrapper

Modifier and Type	Method	Description
ImageWrapper	Browser.getImage(Long id)	Returns the image with the specified ID from OMERO.

Methods in fr.igred.omero that return types with arguments of type ImageWrapper

Modifier and Type	Method	Description
List<ImageWrapper>	Browser.getImages()	Gets all images owned by the current user.
abstract List<ImageWrapper>	Browser.getImages(GenericAnnotationWrapper<?> annotation)	Gets all images with the specified annotation from OMERO.
List<ImageWrapper>	Browser.getImages(Long... ids)	Gets the images with the specified ids from OMERO
List<ImageWrapper>	Browser.getImages(String name)	Gets all images with a certain name from OMERO.
abstract List<ImageWrapper>	Browser.getImages(String projectName, String datasetName, String imageName)	Gets all images with the name specified inside projects and datasets with the given names.
List<ImageWrapper>	Client.getImages(GenericAnnotationWrapper<?> annotation)	Gets all images with the specified annotation from OMERO.
List<ImageWrapper>	Client.getImages(String projectName, String datasetName, String imageName)	Gets all images with the name specified inside projects and datasets with the given names.
abstract List<ImageWrapper>	Browser.getImagesKey(String key)	Deprecated. Gets all images with a certain key
List<ImageWrapper>	Client.getImagesKey(String key)	Deprecated. Gets all images with a certain key
List<ImageWrapper>	Browser.getImagesLike(String motif)	Gets all images with a certain motif in their name from OMERO.
abstract List<ImageWrapper>	Browser.getImagesPairKeyValue(String key, String value)	Deprecated. Gets all images with a certain key value pair from OMERO
List<ImageWrapper>	Client.getImagesPairKeyValue(String key, String value)	Deprecated. Gets all images with a certain key value pair from OMERO
List<ImageWrapper>	Browser.getImagesTagged(TagAnnotationWrapper tag)	Deprecated. Gets all images tagged with a specified tag from OMERO.
List<ImageWrapper>	Browser.getImagesTagged(Long tagId)	Deprecated. Gets all images tagged with a specified tag from OMERO.
List<ImageWrapper>	Browser.getImagesWithKey(String key)	Gets all images with a certain key.
List<ImageWrapper>	Browser.getImagesWithKeyValuePair(String key, String value)	Gets all images with a certain key value pair from OMERO

Uses of ImageWrapper in fr.igred.omero.annotations

Methods in fr.igred.omero.annotations that return types with arguments of type ImageWrapper

Modifier and Type	Method	Description
List<ImageWrapper>	GenericAnnotationWrapper.getImages(Client client)	Gets all images with this annotation from OMERO.

Uses of ImageWrapper in fr.igred.omero.repository

Methods in fr.igred.omero.repository that return ImageWrapper

Modifier and Type	Method	Description
ImageWrapper	WellSampleWrapper.getImage()	Returns the image related to that sample if any.

Methods in fr.igred.omero.repository that return types with arguments of type ImageWrapper

Modifier and Type	Method	Description
List<ImageWrapper>	ImageWrapper.getFilesetImages(Client client)	Returns the list of images sharing the same fileset as the current image.
List<ImageWrapper>	DatasetWrapper.getImages(Client client)	Gets all images in the dataset available from OMERO.
List<ImageWrapper>	DatasetWrapper.getImages(Client client, String name)	Gets all images in the dataset with a certain name from OMERO.
List<ImageWrapper>	FolderWrapper.getImages()	Retrieves the images contained in this folder.
List<ImageWrapper>	FolderWrapper.getImages(Client client)	Retrieves the images contained in this folder.
List<ImageWrapper>	PlateAcquisitionWrapper.getImages()	Retrieves the images contained in the well samples.
List<ImageWrapper>	PlateAcquisitionWrapper.getImages(Client client)	Retrieves the images contained in the wells in the parent plate.
List<ImageWrapper>	PlateWrapper.getImages(Client client)	Returns the images contained in the wells of this plate.
List<ImageWrapper>	ProjectWrapper.getImages(Client client)	Gets all images in the project available from OMERO.
List<ImageWrapper>	ProjectWrapper.getImages(Client client, String name)	Gets all images in the project with a certain name from OMERO.
List<ImageWrapper>	ProjectWrapper.getImages(Client client, String datasetName, String imageName)	Gets all images with a certain name from datasets with the specified name inside this project on OMERO.
List<ImageWrapper>	ScreenWrapper.getImages(Client client)	Retrieves the images contained in this screen.
List<ImageWrapper>	WellWrapper.getImages()	Retrieves the images contained in this well.
List<ImageWrapper>	DatasetWrapper.getImagesKey(Client client, String key)	Deprecated. Gets all images in the dataset with a certain key
List<ImageWrapper>	ProjectWrapper.getImagesKey(Client client, String key)	Deprecated. Gets all images in the project with a certain key
List<ImageWrapper>	DatasetWrapper.getImagesLike(Client client, String motif)	Gets all images in the dataset with a certain motif in their name from OMERO.
List<ImageWrapper>	ProjectWrapper.getImagesLike(Client client, String motif)	Gets all images in the project with a certain motif in their name from OMERO.
List<ImageWrapper>	DatasetWrapper.getImagesPairKeyValue(Client client, String key, String value)	Deprecated. Gets all images in the dataset with a certain key value pair from OMERO
List<ImageWrapper>	ProjectWrapper.getImagesPairKeyValue(Client client, String key, String value)	Deprecated. Gets all images in the project with a certain key value pair from OMERO.
List<ImageWrapper>	DatasetWrapper.getImagesTagged(Client client, TagAnnotationWrapper tag)	Gets all images in the dataset tagged with a specified tag from OMERO.
List<ImageWrapper>	DatasetWrapper.getImagesTagged(Client client, Long tagId)	Gets all images in the dataset tagged with a specified tag from OMERO.
List<ImageWrapper>	ProjectWrapper.getImagesTagged(Client client, TagAnnotationWrapper tag)	Gets all images in the project tagged with a specified tag from OMERO.
List<ImageWrapper>	ProjectWrapper.getImagesTagged(Client client, Long tagId)	Gets all images in the project tagged with a specified tag from OMERO.
List<ImageWrapper>	DatasetWrapper.getImagesWithKey(Client client, String key)	Gets all images in the dataset with a certain key
List<ImageWrapper>	ProjectWrapper.getImagesWithKey(Client client, String key)	Gets all images in the project with a certain key
List<ImageWrapper>	DatasetWrapper.getImagesWithKeyValuePair(Client client, String key, String value)	Gets all images in the dataset with a certain key value pair from OMERO
List<ImageWrapper>	ProjectWrapper.getImagesWithKeyValuePair(Client client, String key, String value)	Gets all images in the project with a certain key value pair from OMERO.
List<ImageWrapper>	DatasetWrapper.replaceImages(Client client, Collection<? extends ImageWrapper> oldImages, ImageWrapper newImage)	Replaces (and unlinks) a collection of images from this dataset by a new image, after copying their annotations and ROIs, and concatenating the descriptions (on new lines).

Methods in fr.igred.omero.repository with parameters of type ImageWrapper

Modifier and Type	Method	Description
void	DatasetWrapper.addImage(Client client, ImageWrapper image)	Adds a single image to the dataset in OMERO
void	FolderWrapper.addImages(Client client, ImageWrapper... images)	Links images to the folder in OMERO.
void	FolderWrapper.addROIs(Client client, ImageWrapper image, ROIWrapper... rois)	Adds ROIs to the folder and associate them to the provided image.
List<ROIWrapper>	FolderWrapper.getROIs(Client client, ImageWrapper image)	Gets the ROIs contained in the folder associated with the provided image.
void	DatasetWrapper.removeImage(Client client, ImageWrapper image)	Removes an image from the dataset in OMERO.
List<ImageWrapper>	DatasetWrapper.replaceImages(Client client, Collection<? extends ImageWrapper> oldImages, ImageWrapper newImage)	Replaces (and unlinks) a collection of images from this dataset by a new image, after copying their annotations and ROIs, and concatenating the descriptions (on new lines).
void	FolderWrapper.setImage(ImageWrapper image)	Deprecated. Sets the image associated to the folder
void	WellSampleWrapper.setImage(ImageWrapper image)	Sets the image linked to this well sample.
void	FolderWrapper.unlinkAllROIs(Client client, ImageWrapper image)	Unlink all ROIs associated to the provided image from the folder.

Method parameters in fr.igred.omero.repository with type arguments of type ImageWrapper

Modifier and Type	Method	Description
void	DatasetWrapper.addImages(Client client, List<? extends ImageWrapper> images)	Adds a list of image to the dataset in OMERO.
List<ImageWrapper>	DatasetWrapper.replaceImages(Client client, Collection<? extends ImageWrapper> oldImages, ImageWrapper newImage)	Replaces (and unlinks) a collection of images from this dataset by a new image, after copying their annotations and ROIs, and concatenating the descriptions (on new lines).

Uses of ImageWrapper in fr.igred.omero.roi

Methods in fr.igred.omero.roi with parameters of type ImageWrapper

Modifier and Type	Method	Description
void	ROIWrapper.setImage(ImageWrapper image)	Sets the image linked to the ROI.