Package fr.igred.omero

Class GenericObjectWrapper<T extends DataObject>

java.lang.Object

fr.igred.omero.GenericObjectWrapper<T>

Type Parameters:

T - Subclass of DataObject

Direct Known Subclasses:

ChannelWrapper, ExperimenterWrapper, GenericAnnotationWrapper, GenericRepositoryObjectWrapper, GenericShapeWrapper, GroupWrapper, PixelsWrapper, ROIWrapper, WellSampleWrapper

public abstract class GenericObjectWrapper<T extends DataObject>
extends Object

Generic class containing a DataObject (or a subclass) object.

Field Summary

Fields

Modifier and Type	Field	Description
protected T	data	Wrapped object

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	GenericObjectWrapper(T object)	Constructor of the class GenericObjectWrapper.

Method Summary

Modifier and Type	Method	Description
boolean	canAnnotate()	Returns true if the object can be annotated false otherwise, depending on permissions level.
boolean	canChgrp()	Returns true if the object can be moved by the user currently logged in, false otherwise, depending on permissions level.
boolean	canChown()	Returns true if the object can be given by the user currently logged in, false otherwise, depending on permissions level.
boolean	canDelete()	Returns true if the object can be deleted by the user currently logged in, false otherwise, depending on permissions level.
boolean	canEdit()	Returns true if the object can be edited by the user currently logged in false otherwise, depending on permissions level.
boolean	canLink()	Returns true if the object can be linked e.g.
protected static void	delete(Client client, IObject object)	Deletes an object from OMERO.
static <T extends GenericObjectWrapper<?>> List<T>	distinct(Collection<? extends T> objects)	Only keeps objects with different IDs in a collection.
Timestamp	getCreated()	Gets the object creation date
Long	getGroupId()	Gets the group ID
long	getId()	Gets the object id
ExperimenterWrapper	getOwner()	Gets the owner ID
void	saveAndUpdate(Client client)	Saves and updates object.
String	toString()	Overridden to return the name of the class and the object id.
protected static <U extends DataObject,V extends GenericObjectWrapper<U>> List<V>	wrap(Collection<U> objects, Function<? super U,? extends V> mapper)	Converts a DataObject list to a ObjectWrapper list, sorted by sorter.
protected static <U extends DataObject,V extends GenericObjectWrapper<U>,W extends Comparable<W>> List<V>	wrap(Collection<U> objects, Function<? super U,? extends V> mapper, Function<? super V,? extends W> sorter)	Converts a DataObject list to a ObjectWrapper list, sorted by sorter.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

data

protected T extends DataObject data

Wrapped object

Constructor Detail

GenericObjectWrapper

protected GenericObjectWrapper(T object)

Constructor of the class GenericObjectWrapper.

Parameters:

object - The object contained in the GenericObjectWrapper.

Method Detail

wrap

protected static <U extends DataObject,V extends GenericObjectWrapper<U>,W extends Comparable<W>> List<V> wrap(Collection<U> objects,
                                                                                                                           Function<? super U,? extends V> mapper,
                                                                                                                           Function<? super V,? extends W> sorter)

Converts a DataObject list to a ObjectWrapper list, sorted by sorter.

Type Parameters:

U - The type of input (extends DataObject).

V - The type of output (extends ObjectWrapper).

W - The type used to sort the output.

Parameters:

objects - The DataObject list.

mapper - The method used to map objects.

sorter - The method used to sort the objects.

Returns:

See above.

wrap

protected static <U extends DataObject,V extends GenericObjectWrapper<U>> List<V> wrap(Collection<U> objects,
                                                                                             Function<? super U,? extends V> mapper)

Converts a DataObject list to a ObjectWrapper list, sorted by sorter.

Type Parameters:

U - The type of input (extends DataObject).

V - The type of output (extends ObjectWrapper).

Parameters:

objects - The DataObject list.

mapper - The method used to map objects.

Returns:

See above.

delete

protected static void delete(Client client,
                             IObject object)
                      throws ServiceException,
                             AccessException,
                             ExecutionException,
                             OMEROServerError,
                             InterruptedException

Deletes an object from OMERO.

Parameters:

client - The client handling the connection.

object - The OMERO object.

Throws:

ServiceException - Cannot connect to OMERO.

AccessException - Cannot access data.

ExecutionException - A Facility can't be retrieved or instantiated.

OMEROServerError - Server error.

InterruptedException - If block(long) does not return.

distinct

public static <T extends GenericObjectWrapper<?>> List<T> distinct(Collection<? extends T> objects)

Only keeps objects with different IDs in a collection.

Type Parameters:

T - The objects type.

Parameters:

objects - A collection of objects.

Returns:

Distinct objects list, sorted by ID.

getId

public long getId()

Gets the object id

Returns:

id.

getCreated

public Timestamp getCreated()

Gets the object creation date

Returns:

creation date.

getOwner

public ExperimenterWrapper getOwner()

Gets the owner ID

Returns:

owner id.

getGroupId

public Long getGroupId()

Gets the group ID

Returns:

group id.

toString

public String toString()

Overridden to return the name of the class and the object id.

Overrides:

toString in class Object

saveAndUpdate

public void saveAndUpdate(Client client)
                   throws ExecutionException,
                          ServiceException,
                          AccessException

Saves and updates object.

Parameters:

client - The client handling the connection.

Throws:

ServiceException - Cannot connect to OMERO.

AccessException - Cannot access data.

ExecutionException - A Facility can't be retrieved or instantiated.

canAnnotate

public boolean canAnnotate()

Returns true if the object can be annotated false otherwise, depending on permissions level.

Returns:

See above.

canEdit

public boolean canEdit()

Returns true if the object can be edited by the user currently logged in false otherwise, depending on permissions level.

Returns:

See above.

canLink

public boolean canLink()

Returns true if the object can be linked e.g. image add to dataset, by the user currently logged in, false otherwise, depending on permissions level.

Returns:

See above.

canDelete

public boolean canDelete()

Returns true if the object can be deleted by the user currently logged in, false otherwise, depending on permissions level.

Returns:

See above.

canChgrp

public boolean canChgrp()

Returns true if the object can be moved by the user currently logged in, false otherwise, depending on permissions level.

Returns:

See above.

canChown

public boolean canChown()

Returns true if the object can be given by the user currently logged in, false otherwise, depending on permissions level.

Returns:

See above.