fr.igred.omero

Class ImportWrapper<T extends DataObject>

java.lang.Object

fr.igred.omero.ObjectWrapper<T>

fr.igred.omero.AnnotatableWrapper<T>

fr.igred.omero.ImportWrapper<T>

Type Parameters:

T - Subclass of DataObject

All Implemented Interfaces:

Annotatable, RemoteObject, RepositoryObject

Direct Known Subclasses:

DatasetWrapper, ScreenWrapper

public abstract class ImportWrapper<T extends DataObject>
extends AnnotatableWrapper<T>
implements RepositoryObject

Generic class containing a DataObject (or a subclass) object.

Field Summary

Fields inherited from class fr.igred.omero.ObjectWrapper

data

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	ImportWrapper(T o) Constructor of the class ImportWrapper.

Method Summary

Modifier and Type	Method and Description
protected List<Long>	importImage(ConnectionHandler client, String path) Imports one image file to the target in OMERO.
protected boolean	importImages(ConnectionHandler client, String... paths) Imports all images candidates in the paths to the target in OMERO.

Methods inherited from class fr.igred.omero.AnnotatableWrapper

addAndReplaceFile, addAndReplaceTable, addKeyValuePair, addTag, addTag, annotationLinkType, getAnnotations, getFileAnnotations, getMapAnnotations, getMyRating, getTable, getTags, rate, removeLink, unlink

Methods inherited from class fr.igred.omero.ObjectWrapper

asDataObject, canAnnotate, canChgrp, canChown, canDelete, canEdit, canLink, getCreated, getGroupId, getId, getOwner, getUpdated, saveAndUpdate, toString, wrap, wrap

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface fr.igred.omero.RepositoryObject

getChildren, getDescription, getName, getParents, reload

Methods inherited from interface fr.igred.omero.RemoteObject

asDataObject, canAnnotate, canChgrp, canChown, canDelete, canEdit, canLink, distinct, flatten, getCreated, getElementsOf, getGroupId, getId, getOwner, getUpdated, saveAndUpdate

Methods inherited from interface fr.igred.omero.Annotatable

addAndReplaceFile, addAndReplaceTable, addFile, addTable, addTags, copyAnnotationLinks, getAnnotationData, getKeyValuePairs, getTables, getValues, isLinked, link, link, link, linkIfNotLinked

Constructor Detail

ImportWrapper

protected ImportWrapper(T o)

Constructor of the class ImportWrapper.

Parameters:

o - The DataObject to wrap in the ImportWrapper.

Method Detail

importImages

protected boolean importImages(ConnectionHandler client,
                               String... paths)
                        throws ServiceException,
                               AccessException,
                               IOException

Imports all images candidates in the paths to the target in OMERO.

Parameters:

client - The client handling the connection.

paths - Paths to the image files on the computer.

Returns:

If the import did not exit because of an error.

Throws:

ServiceException - Cannot connect to OMERO.

AccessException - Cannot access data.

IOException - Cannot read file.

importImage

protected List<Long> importImage(ConnectionHandler client,
                                 String path)
                          throws ServiceException,
                                 AccessException,
                                 IOException

Imports one image file to the target in OMERO.

Parameters:

client - The client handling the connection.

path - Path to the image file on the computer.

Returns:

The list of IDs of the newly imported images.

Throws:

ServiceException - Cannot connect to OMERO.

AccessException - Cannot access data.

IOException - Cannot read file.