Uses of Interface
fr.igred.omero.client.Client

Packages that use Client

Package	Description
fr.igred.omero	This package contains the main interfaces and abstract classes to handle OME Remote Objects.
fr.igred.omero.annotations	This package contains interfaces and classes for handling annotations.
fr.igred.omero.client	This package contains the client interfaces used to interact with an OMERO server and a class implementing them.
fr.igred.omero.containers	This package contains interfaces and classes related to the hierarchical organization for images, e.g. containers (projects, datasets and folders).
fr.igred.omero.core	This package contains interfaces and classes to handle images and their content, such as pixels, channels or planes.

Uses of Client in fr.igred.omero

Methods in fr.igred.omero with parameters of type Client

Modifier and Type	Method and Description
default long	Annotatable.addAndReplaceFile(Client client, File file) Uploads a file, links it to the object and unlinks previous files with the same name, or deletes them if they're orphaned.
default long	Annotatable.addAndReplaceFile(Client client, File file) Uploads a file, links it to the object and unlinks previous files with the same name, or deletes them if they're orphaned.
long	Annotatable.addAndReplaceFile(Client client, File file, ReplacePolicy policy) Uploads a file, links it to the object and unlinks or deletes previous files with the same name.
long	AnnotatableWrapper.addAndReplaceFile(Client client, File file, ReplacePolicy policy) Uploads a file, links it to the object and unlinks or deletes previous files with the same name.
long	AnnotatableWrapper.addAndReplaceFile(Client client, File file, ReplacePolicy policy) Uploads a file, links it to the object and unlinks or deletes previous files with the same name.
long	Annotatable.addAndReplaceFile(Client client, File file, ReplacePolicy policy) Uploads a file, links it to the object and unlinks or deletes previous files with the same name.
default void	Annotatable.addAndReplaceTable(Client client, Table table) Adds a table to the object in OMERO and unlinks previous tables with the same name, or deletes them if they're orphaned.
default void	Annotatable.addAndReplaceTable(Client client, Table table) Adds a table to the object in OMERO and unlinks previous tables with the same name, or deletes them if they're orphaned.
void	Annotatable.addAndReplaceTable(Client client, Table table, ReplacePolicy policy) Adds a table to the object in OMERO and unlinks or deletes previous tables with the same name.
void	AnnotatableWrapper.addAndReplaceTable(Client client, Table table, ReplacePolicy policy) Adds a table to the object in OMERO and unlinks or deletes previous tables with the same name.
void	AnnotatableWrapper.addAndReplaceTable(Client client, Table table, ReplacePolicy policy) Adds a table to the object in OMERO and unlinks or deletes previous tables with the same name.
void	Annotatable.addAndReplaceTable(Client client, Table table, ReplacePolicy policy) Adds a table to the object in OMERO and unlinks or deletes previous tables with the same name.
default void	Annotatable.copyAnnotationLinks(Client client, Annotatable object) Copies annotation links from some other object to this one.
default void	Annotatable.copyAnnotationLinks(Client client, Annotatable object) Copies annotation links from some other object to this one.
default void	Annotatable.linkIfNotLinked(Client client, Annotation... annotations) Adds multiple annotations to the object in OMERO if they are not already linked.
default void	Annotatable.linkIfNotLinked(Client client, Annotation... annotations) Adds multiple annotations to the object in OMERO if they are not already linked.
void	Annotatable.rate(Client client, int rating) Rates the object (using a rating annotation).
void	AnnotatableWrapper.rate(Client client, int rating) Rates the object (using a rating annotation).
void	AnnotatableWrapper.rate(Client client, int rating) Rates the object (using a rating annotation).
void	Annotatable.rate(Client client, int rating) Rates the object (using a rating annotation).
protected void	AnnotatableWrapper.removeLink(Client client, String linkType, long childId) Removes the link of the given type with the given child ID.
protected void	AnnotatableWrapper.removeLink(Client client, String linkType, long childId) Removes the link of the given type with the given child ID.
<A extends Annotation> void	Annotatable.unlink(Client client, A annotation) Unlinks the given annotation from the current object.
<A extends Annotation> void	AnnotatableWrapper.unlink(Client client, A annotation) Unlinks the given annotation from the current object.
<A extends Annotation> void	AnnotatableWrapper.unlink(Client client, A annotation) Unlinks the given annotation from the current object.
<A extends Annotation> void	Annotatable.unlink(Client client, A annotation) Unlinks the given annotation from the current object.

Uses of Client in fr.igred.omero.annotations

Methods in fr.igred.omero.annotations with parameters of type Client

Modifier and Type	Method and Description
default void	Table.addRows(Client client, ij.measure.ResultsTable results, Long imageId, Collection<? extends Roi> ijRois) Adds rows from an ImageJ ResultsTable.
default void	Table.addRows(Client client, ij.measure.ResultsTable results, Long imageId, Collection<? extends Roi> ijRois) Adds rows from an ImageJ ResultsTable.
void	Table.addRows(Client client, ij.measure.ResultsTable results, Long imageId, Collection<? extends Roi> ijRois, String roiProperty) Adds rows from an ImageJ ResultsTable.
void	TableWrapper.addRows(Client client, ij.measure.ResultsTable results, Long imageId, Collection<? extends Roi> ijRois, String roiProperty) Adds rows from an ImageJ ResultsTable.
void	TableWrapper.addRows(Client client, ij.measure.ResultsTable results, Long imageId, Collection<? extends Roi> ijRois, String roiProperty) Adds rows from an ImageJ ResultsTable.
void	Table.addRows(Client client, ij.measure.ResultsTable results, Long imageId, Collection<? extends Roi> ijRois, String roiProperty) Adds rows from an ImageJ ResultsTable.

Constructors in fr.igred.omero.annotations with parameters of type Client

Constructor and Description
TableWrapper(Client client, ij.measure.ResultsTable results, Long imageId, Collection<? extends Roi> ijRois) Constructor of the class TableWrapper.
TableWrapper(Client client, ij.measure.ResultsTable results, Long imageId, Collection<? extends Roi> ijRois) Constructor of the class TableWrapper.
TableWrapper(Client client, ij.measure.ResultsTable results, Long imageId, Collection<? extends Roi> ijRois, String roiProperty) Constructor of the class TableWrapper.
TableWrapper(Client client, ij.measure.ResultsTable results, Long imageId, Collection<? extends Roi> ijRois, String roiProperty) Constructor of the class TableWrapper.

Uses of Client in fr.igred.omero.client

Classes in fr.igred.omero.client that implement Client

Modifier and Type	Class and Description
class	GatewayWrapper Allows the user to connect to OMERO and browse through all the data accessible to the user.

Methods in fr.igred.omero.client that return Client

Modifier and Type	Method and Description
Client	Client.sudo(String username) Gets the client associated with the username in the parameters.
Client	GatewayWrapper.sudo(String username) Returns a Client associated with the given username.
Client	GatewayWrapper.sudo(String username) Returns a Client associated with the given username.
Client	Client.sudo(String username) Gets the client associated with the username in the parameters.

Uses of Client in fr.igred.omero.containers

Methods in fr.igred.omero.containers with parameters of type Client

Modifier and Type	Method and Description
default List<Long>	Dataset.importAndReplaceImages(Client client, String path) Imports one image file to the dataset in OMERO and replace older images sharing the same name after copying their annotations and ROIs, and concatenating the descriptions (on new lines) by unlinking them.
default List<Long>	Dataset.importAndReplaceImages(Client client, String path) Imports one image file to the dataset in OMERO and replace older images sharing the same name after copying their annotations and ROIs, and concatenating the descriptions (on new lines) by unlinking them.
default List<Long>	Dataset.importAndReplaceImages(Client client, String path, ReplacePolicy policy) Imports one image file to the dataset in OMERO and replace older images sharing the same name after copying their annotations and ROIs, and concatenating the descriptions (on new lines) by unlinking or even deleting them.
default List<Long>	Dataset.importAndReplaceImages(Client client, String path, ReplacePolicy policy) Imports one image file to the dataset in OMERO and replace older images sharing the same name after copying their annotations and ROIs, and concatenating the descriptions (on new lines) by unlinking or even deleting them.
void	Project.removeDataset(Client client, Dataset dataset) Removes a dataset from the project in OMERO.
void	ProjectWrapper.removeDataset(Client client, Dataset dataset) Removes a dataset from the project in OMERO.
void	ProjectWrapper.removeDataset(Client client, Dataset dataset) Removes a dataset from the project in OMERO.
void	Project.removeDataset(Client client, Dataset dataset) Removes a dataset from the project in OMERO.
void	Dataset.removeImage(Client client, Image image) Removes an image from the dataset in OMERO.
void	DatasetWrapper.removeImage(Client client, Image image) Removes an image from the dataset in OMERO.
void	DatasetWrapper.removeImage(Client client, Image image) Removes an image from the dataset in OMERO.
void	Dataset.removeImage(Client client, Image image) Removes an image from the dataset in OMERO.
default List<Image>	Dataset.replaceImages(Client client, Collection<? extends Image> oldImages, Image newImage) Replaces (and unlinks) a collection of images from this dataset by a new image, after copying their annotations and ROIs, and concatenating the descriptions (on new lines).
default List<Image>	Dataset.replaceImages(Client client, Collection<? extends Image> oldImages, Image newImage) Replaces (and unlinks) a collection of images from this dataset by a new image, after copying their annotations and ROIs, and concatenating the descriptions (on new lines).

Uses of Client in fr.igred.omero.core

Methods in fr.igred.omero.core with parameters of type Client

Modifier and Type	Method and Description
default Color	Image.getChannelColor(Client client, int index) Gets the current color of the channel, or the original if it cannot be retrieved.
default Color	Image.getChannelColor(Client client, int index) Gets the current color of the channel, or the original if it cannot be retrieved.
default ij.ImagePlus	Image.toImagePlus(Client client) Generates the ImagePlus from the ij library corresponding to the image from OMERO WARNING : you need to include the ij library to use this function
default ij.ImagePlus	Image.toImagePlus(Client client) Generates the ImagePlus from the ij library corresponding to the image from OMERO WARNING : you need to include the ij library to use this function
ij.ImagePlus	Image.toImagePlus(Client client, int[] xBounds, int[] yBounds, int[] cBounds, int[] zBounds, int[] tBounds) Gets the imagePlus generated from the image from OMERO corresponding to the bound.
ij.ImagePlus	ImageWrapper.toImagePlus(Client client, int[] xBounds, int[] yBounds, int[] cBounds, int[] zBounds, int[] tBounds) Gets the imagePlus generated from the image from OMERO corresponding to the bound.
ij.ImagePlus	ImageWrapper.toImagePlus(Client client, int[] xBounds, int[] yBounds, int[] cBounds, int[] zBounds, int[] tBounds) Gets the imagePlus generated from the image from OMERO corresponding to the bound.
ij.ImagePlus	Image.toImagePlus(Client client, int[] xBounds, int[] yBounds, int[] cBounds, int[] zBounds, int[] tBounds) Gets the imagePlus generated from the image from OMERO corresponding to the bound.
default ij.ImagePlus	Image.toImagePlus(Client client, ROI roi) Gets the imagePlus from the image generated from the ROI.
default ij.ImagePlus	Image.toImagePlus(Client client, ROI roi) Gets the imagePlus from the image generated from the ROI.