Uses of Interface
fr.igred.omero.client.Browser

Packages that use Browser

Package	Description
fr.igred.omero	This package contains the main interfaces and abstract classes to handle OME Remote Objects.
fr.igred.omero.annotations	This package contains interfaces and classes for handling annotations.
fr.igred.omero.client	This package contains the client interfaces used to interact with an OMERO server and a class implementing them.
fr.igred.omero.containers	This package contains interfaces and classes related to the hierarchical organization for images,
fr.igred.omero.core	This package contains interfaces and classes to handle images and their content, such as pixels, channels or planes.
fr.igred.omero.screen	This package contains interfaces and classes related to the HCS organization, e.g.

Uses of Browser in fr.igred.omero

Methods in fr.igred.omero with parameters of type Browser

Modifier and Type	Method	Description
default java.util.List<AnnotationData>	Annotatable.getAnnotationData(Browser browser)	Retrieves annotations linked to the object.
java.util.List<Annotation>	Annotatable.getAnnotations(Browser browser)	Retrieves annotations linked to the object (of known types).
java.util.List<Annotation>	AnnotatableWrapper.getAnnotations(Browser browser)	Retrieves annotations linked to the object (of known types).
java.util.List<Dataset>	ContainerLinked.getDatasets(Browser browser)	Retrieves the datasets linked to this object, either directly, or through parents/children.
java.util.List<FileAnnotation>	Annotatable.getFileAnnotations(Browser browser)	Returns the file annotations
java.util.List<FileAnnotation>	AnnotatableWrapper.getFileAnnotations(Browser browser)	Returns the file annotations
java.util.List<Image>	ImageLinked.getImages(Browser browser)	Retrieves the images linked to this object, either directly, or through parents/children.
default java.util.List<java.util.Map.Entry<java.lang.String,java.lang.String>>	Annotatable.getKeyValuePairs(Browser browser)	Gets the List of Key-Value pairs associated to an object.
java.util.List<MapAnnotation>	Annotatable.getMapAnnotations(Browser browser)	Gets all map annotations linked to an object in OMERO, if possible.
java.util.List<MapAnnotation>	AnnotatableWrapper.getMapAnnotations(Browser browser)	Gets all map annotations linked to an object in OMERO, if possible.
int	Annotatable.getMyRating(Browser browser)	Returns the user rating for this object (averaged if multiple ratings are linked).
int	AnnotatableWrapper.getMyRating(Browser browser)	Returns the user rating for this object (averaged if multiple ratings are linked).
java.util.List<PlateAcquisition>	HCSLinked.getPlateAcquisitions(Browser browser)	Returns the plate acquisitions linked to this object, either directly, or through parents/children.
java.util.List<Plate>	HCSLinked.getPlates(Browser browser)	Returns the plates linked to this object, either directly, or through parents/children.
java.util.List<Project>	ContainerLinked.getProjects(Browser browser)	Retrieves the projects linked to this object, either directly, or through parents/children.
java.util.List<Screen>	HCSLinked.getScreens(Browser browser)	Retrieves the screens linked to this object, either directly, or through parents/children.
java.util.List<TagAnnotation>	Annotatable.getTags(Browser browser)	Gets all tags linked to an object in OMERO, if possible.
java.util.List<TagAnnotation>	AnnotatableWrapper.getTags(Browser browser)	Gets all tags linked to an object in OMERO, if possible.
default java.util.List<java.lang.String>	Annotatable.getValues(Browser browser, java.lang.String key)	Gets the value from a Key-Value pair associated to the object.
java.util.List<Well>	HCSLinked.getWells(Browser browser)	Retrieves the wells linked to this object, either directly, or through parents/children.
default <A extends Annotation> boolean	Annotatable.isLinked(Browser browser, A annotation)	Checks if a specific annotation is linked to the object.

Uses of Browser in fr.igred.omero.annotations

Methods in fr.igred.omero.annotations with parameters of type Browser

Modifier and Type	Method	Description
default int	Annotation.countAnnotationLinks(Browser browser)	Returns the number of annotations links for this object.
java.util.List<Dataset>	AnnotationWrapper.getDatasets(Browser browser)	Gets all datasets with this annotation from OMERO.
java.util.List<Folder>	Annotation.getFolders(Browser browser)	Gets all folders with this annotation from OMERO.
java.util.List<Folder>	AnnotationWrapper.getFolders(Browser browser)	Gets all folders with this annotation from OMERO.
java.util.List<Image>	AnnotationWrapper.getImages(Browser browser)	Gets all images with this annotation from OMERO.
java.util.List<PlateAcquisition>	AnnotationWrapper.getPlateAcquisitions(Browser browser)	Gets all plate acquisitions with this annotation from OMERO.
java.util.List<Plate>	AnnotationWrapper.getPlates(Browser browser)	Gets all plates with this annotation from OMERO.
java.util.List<Project>	AnnotationWrapper.getProjects(Browser browser)	Gets all projects with this annotation from OMERO.
java.util.List<Screen>	AnnotationWrapper.getScreens(Browser browser)	Gets all screens with this annotation from OMERO.
java.util.List<Well>	AnnotationWrapper.getWells(Browser browser)	Gets all wells with this annotation from OMERO.

Uses of Browser in fr.igred.omero.client

Subinterfaces of Browser in fr.igred.omero.client

Modifier and Type	Interface	Description
interface	Client	Client interface to connect to OMERO, browse through all the data accessible to the user and modify it.

Classes in fr.igred.omero.client that implement Browser

Modifier and Type	Class	Description
class	GatewayWrapper	Allows the user to connect to OMERO and browse through all the data accessible to the user.

Uses of Browser in fr.igred.omero.containers

Methods in fr.igred.omero.containers with parameters of type Browser

Modifier and Type	Method	Description
default java.util.List<Dataset>	Dataset.getDatasets(Browser browser)	Reloads and returns this dataset (updated from OMERO) as a singleton list.
default java.util.List<Dataset>	Project.getDatasets(Browser browser)	Reloads this project and retrieves the updated list of datasets contained in this project.
java.util.List<Image>	Dataset.getImages(Browser browser)	Gets all images in the dataset available from OMERO.
default java.util.List<Image>	Dataset.getImages(Browser browser, java.lang.String name)	Gets all images in the dataset with a certain name from OMERO.
java.util.List<Image>	DatasetWrapper.getImages(Browser browser)	Gets all images in the dataset available from OMERO.
default java.util.List<Image>	Folder.getImages(Browser browser)	Retrieves the images contained in this folder.
java.util.List<Image>	Project.getImages(Browser browser)	Gets all images in the project available from OMERO.
default java.util.List<Image>	Project.getImages(Browser browser, java.lang.String name)	Gets all images in the project with a certain name from OMERO.
default java.util.List<Image>	Project.getImages(Browser browser, java.lang.String datasetName, java.lang.String imageName)	Gets all images with a certain name from datasets with the specified name inside this project on OMERO.
java.util.List<Image>	ProjectWrapper.getImages(Browser browser)	Gets all images in the project available from OMERO.
default java.util.List<Image>	Dataset.getImagesLike(Browser browser, java.lang.String motif)	Gets all images in the dataset with a certain motif in their name from OMERO.
default java.util.List<Image>	Project.getImagesLike(Browser browser, java.lang.String motif)	Gets all images in the project with a certain motif in their name from OMERO.
default java.util.List<Image>	Dataset.getImagesTagged(Browser browser, TagAnnotation tag)	Gets all images in the dataset tagged with a specified tag from OMERO.
default java.util.List<Image>	Dataset.getImagesTagged(Browser browser, java.lang.Long tagId)	Gets all images in the dataset tagged with a specified tag from OMERO.
default java.util.List<Image>	Project.getImagesTagged(Browser browser, TagAnnotation tag)	Gets all images in the project tagged with a specified tag from OMERO.
default java.util.List<Image>	Project.getImagesTagged(Browser browser, java.lang.Long tagId)	Gets all images in the project tagged with a specified tag from OMERO.
default java.util.List<Image>	Dataset.getImagesWithKey(Browser browser, java.lang.String key)	Gets all images in the dataset with a certain key
default java.util.List<Image>	Project.getImagesWithKey(Browser browser, java.lang.String key)	Gets all images in the project with a certain key
default java.util.List<Image>	Dataset.getImagesWithKeyValuePair(Browser browser, java.lang.String key, java.lang.String value)	Gets all images in the dataset with a certain key value pair from OMERO
default java.util.List<Image>	Project.getImagesWithKeyValuePair(Browser browser, java.lang.String key, java.lang.String value)	Gets all images in the project with a certain key value pair from OMERO.
default java.util.List<Project>	Dataset.getProjects(Browser browser)	Retrieves the projects containing this dataset.
default java.util.List<Project>	Project.getProjects(Browser browser)	Reloads and returns this project as a singleton list.
void	Dataset.reload(Browser browser)	Reloads the dataset from OMERO.
void	DatasetWrapper.reload(Browser browser)	Reloads the dataset from OMERO.
void	Folder.reload(Browser browser)	Reloads the folder from OMERO, to update all links.
void	FolderWrapper.reload(Browser browser)	Reloads the folder from OMERO, to update all links.
void	Project.reload(Browser browser)	Reloads the project from OMERO.
void	ProjectWrapper.reload(Browser browser)	Reloads the project from OMERO.

Uses of Browser in fr.igred.omero.core

Methods in fr.igred.omero.core with parameters of type Browser

Modifier and Type	Method	Description
default java.awt.Color	Image.getChannelImportedColor(Browser browser, int index)	Gets the original color of the channel
default java.lang.String	Image.getChannelName(Browser browser, int index)	Gets the name of the channel.
java.util.List<Channel>	Image.getChannels(Browser browser)	Gets the image channels.
java.util.List<Channel>	ImageWrapper.getChannels(Browser browser)	Gets the image channels.
default java.util.List<Dataset>	Image.getDatasets(Browser browser)	Retrieves the datasets containing this image
default java.util.List<Image>	Image.getFilesetImages(Browser browser)	Returns the list of images sharing the same fileset as the current image.
default java.util.List<Folder>	Image.getFolders(Browser browser)	Gets the list of folders linked to this image.
default java.util.List<Image>	Image.getImages(Browser browser)	Returns this image, updated from OMERO, as a singleton list.
default java.util.List<PlateAcquisition>	Image.getPlateAcquisitions(Browser browser)	Returns the plate acquisitions linked to this image.
default java.util.List<Plate>	Image.getPlates(Browser browser)	Retrieves the plates containing this image.
default java.util.List<Project>	Image.getProjects(Browser browser)	Retrieves the projects containing this image.
default java.util.List<Screen>	Image.getScreens(Browser browser)	Retrieves the screens containing this image
default java.util.List<Well>	Image.getWells(Browser browser)	Retrieves the wells containing this image.
default boolean	Image.isOrphaned(Browser browser)	Checks if image is orphaned (not in a WellSample nor linked to a dataset).
void	Pixels.loadPlanesInfo(Browser browser)	Loads the planes information.
void	PixelsWrapper.loadPlanesInfo(Browser browser)	Loads the planes information.

Uses of Browser in fr.igred.omero.screen

Methods in fr.igred.omero.screen with parameters of type Browser

Modifier and Type	Method	Description
default java.util.List<Image>	Plate.getImages(Browser browser)	Returns the images contained in the wells of this plate.
default java.util.List<Image>	PlateAcquisition.getImages(Browser browser)	Retrieves the images contained in the wells in the parent plate.
default java.util.List<Image>	Screen.getImages(Browser browser)	Retrieves the images contained in this screen.
default java.util.List<Image>	Well.getImages(Browser browser)	Reloads this well and retrieves the images it contains.
default java.util.List<Image>	WellSample.getImages(Browser browser)	Retrieves the image contained in this Well Sample as a singleton list.
default java.util.List<PlateAcquisition>	Plate.getPlateAcquisitions(Browser browser)	Reloads this plate and returns the related plate acquisitions.
default java.util.List<PlateAcquisition>	PlateAcquisition.getPlateAcquisitions(Browser browser)	Returns this plate acquisitions as a singleton list.
default java.util.List<PlateAcquisition>	Screen.getPlateAcquisitions(Browser browser)	Returns the plate acquisitions linked to this object, either directly, or through parents/children.
default java.util.List<PlateAcquisition>	Well.getPlateAcquisitions(Browser browser)	Refreshes this well and returns the plate acquisitions linked to it.
default java.util.List<PlateAcquisition>	WellSample.getPlateAcquisitions(Browser browser)	Returns the plate acquisitions linked to the parent Well.
default java.util.List<Plate>	Plate.getPlates(Browser browser)	Reloads and returns this plate as a singleton list.
default java.util.List<Plate>	PlateAcquisition.getPlates(Browser browser)	Returns the (updated) parent plate as a singleton list.
default java.util.List<Plate>	Screen.getPlates(Browser browser)	Reloads this screen and returns the updated list of plates linked to this screen.
default java.util.List<Plate>	Well.getPlates(Browser browser)	Reloads this well and returns the plate containing it.
default java.util.List<Plate>	WellSample.getPlates(Browser browser)	Returns the plates containing the parent Well.
default java.util.List<Screen>	Plate.getScreens(Browser browser)	Retrieves the screens containing this plate.
default java.util.List<Screen>	PlateAcquisition.getScreens(Browser browser)	Retrieves the screens containing the parent plates.
default java.util.List<Screen>	Screen.getScreens(Browser browser)	Reloads and returns this screen as a singleton list.
default java.util.List<Screen>	Well.getScreens(Browser browser)	Refreshes this well and retrieves the screens containing it.
default java.util.List<Screen>	WellSample.getScreens(Browser browser)	Returns the screens containing the parent Well.
default Well	WellSample.getWell(Browser browser)	Retrieves the well containing this well sample.
java.util.List<Well>	Plate.getWells(Browser browser)	Gets all wells in the plate available from OMERO.
default java.util.List<Well>	PlateAcquisition.getWells(Browser browser)	Retrieves the wells contained in the parent plate.
java.util.List<Well>	PlateWrapper.getWells(Browser browser)	Gets all wells in the plate available from OMERO.
default java.util.List<Well>	Screen.getWells(Browser browser)	Retrieves the wells linked to this object, either directly, or through parents/children.
default java.util.List<Well>	Well.getWells(Browser browser)	Reloads this well and returns it as a singleton list.
default java.util.List<Well>	WellSample.getWells(Browser browser)	Retrieves the well containing this Well Sample as a singleton list.
void	Plate.reload(Browser browser)	Reloads the plate from OMERO.
void	PlateWrapper.reload(Browser browser)	Reloads the plate from OMERO.
void	Screen.reload(Browser browser)	Reloads the screen from OMERO.
void	ScreenWrapper.reload(Browser browser)	Reloads the screen from OMERO.
void	Well.reload(Browser browser)	Reloads the well from OMERO.
void	WellWrapper.reload(Browser browser)	Reloads the well from OMERO.