Package fr.igred.omero.screen

Class WellWrapper

java.lang.Object

fr.igred.omero.ObjectWrapper<T>

fr.igred.omero.AnnotatableWrapper<T>

fr.igred.omero.RepositoryObjectWrapper<WellData>

fr.igred.omero.screen.WellWrapper

All Implemented Interfaces:

Annotatable, HCSLinked, ImageLinked, RemoteObject, RepositoryObject, Well

public class WellWrapper
extends RepositoryObjectWrapper<WellData>
implements Well

Class containing a WellData object.

Wraps function calls to the WellData contained.

Field Summary

Fields

Modifier and Type	Field	Description
static java.lang.String	ANNOTATION_LINK	Annotation link name for this type of object

Fields inherited from class fr.igred.omero.ObjectWrapper

data

Constructor Summary

Constructors

Constructor	Description
WellWrapper(WellData well)	Constructor of the class WellWrapper.

Method Summary

Modifier and Type	Method	Description
protected java.lang.String	annotationLinkType()	Returns the type of annotation link for this object.
int	getAlpha()	Returns the alpha component of the color associated to the well, or -1.
int	getBlue()	Returns the blue component of the color associated to the well, or -1.
java.lang.Integer	getColumn()	Returns the column used to indicate the location of the well on the grid.
java.lang.String	getDescription()	Gets the object description
int	getGreen()	Returns the green component of the color associated to the well, or -1.
java.lang.String	getName()	Gets the object name.
Plate	getPlate()	Returns the plate containing this Well.
int	getRed()	Returns the red component of the color associated to the well, or -1.
java.lang.Integer	getRow()	Returns the row used to indicate the location of the well on the grid.
java.lang.String	getStatus()	Returns the status of the well.
java.util.List<WellSample>	getWellSamples()	Returns the well samples linked to the well.
java.lang.String	getWellType()	Returns a human-readable identifier for the screening status e.g.
void	reload(Browser browser)	Reloads the well from OMERO.
void	setAlpha(java.lang.Integer alpha)	Sets the alpha component of the color associated to the well.
void	setBlue(java.lang.Integer blue)	Sets the blue component of the color associated to the well.
void	setGreen(java.lang.Integer green)	Sets the green component of the color associated to the well.
void	setRed(java.lang.Integer red)	Sets the red component of the color associated to the well.
void	setStatus(java.lang.String status)	Sets the status of the well.
void	setWellType(java.lang.String type)	Sets a human-readable identifier for the screening status e.g.

Methods inherited from class fr.igred.omero.RepositoryObjectWrapper

importImage, importImages

Methods inherited from class fr.igred.omero.AnnotatableWrapper

addAndReplaceFile, addAndReplaceTable, addKeyValuePair, addTag, addTag, getAnnotations, getFileAnnotations, getMapAnnotations, getMyRating, getTable, getTags, rate, removeLink, unlink

Methods inherited from class fr.igred.omero.ObjectWrapper

asDataObject, canAnnotate, canChgrp, canChown, canDelete, canEdit, canLink, getCreated, getGroupId, getId, getOwner, saveAndUpdate, toString, wrap, wrap

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface fr.igred.omero.Annotatable

addAndReplaceFile, addAndReplaceFile, addAndReplaceTable, addAndReplaceTable, addFile, addKeyValuePair, addTable, addTag, addTag, addTags, copyAnnotationLinks, getAnnotationData, getAnnotations, getFileAnnotations, getKeyValuePairs, getMapAnnotations, getMyRating, getTable, getTables, getTags, getValues, isLinked, link, link, linkIfNotLinked, rate, unlink

Methods inherited from interface fr.igred.omero.RemoteObject

canAnnotate, canChgrp, canChown, canDelete, canEdit, canLink, getCreated, getGroupId, getId, getOwner, saveAndUpdate

Methods inherited from interface fr.igred.omero.screen.Well

asDataObject, getImages, getImages, getPlateAcquisitions, getPlates, getScreens, getWells

Field Detail

ANNOTATION_LINK

public static final java.lang.String ANNOTATION_LINK

Annotation link name for this type of object

See Also:

Constant Field Values

Constructor Detail

WellWrapper

public WellWrapper(WellData well)

Constructor of the class WellWrapper.

Parameters:

well - The WellData contained in the WellWrapper.

Method Detail

annotationLinkType

protected java.lang.String annotationLinkType()

Returns the type of annotation link for this object.

Specified by:

annotationLinkType in class AnnotatableWrapper<WellData>

Returns:

See above.

getName

public java.lang.String getName()

Gets the object name.

Specified by:

getName in interface RepositoryObject

Returns:

See above.

getDescription

public java.lang.String getDescription()

Gets the object description

Specified by:

getDescription in interface RepositoryObject

Returns:

See above.

getWellSamples

public java.util.List<WellSample> getWellSamples()

Returns the well samples linked to the well.

Specified by:

getWellSamples in interface Well

Returns:

See above.

getPlate

public Plate getPlate()

Returns the plate containing this Well.

Specified by:

getPlate in interface Well

Returns:

See above.

getColumn

public java.lang.Integer getColumn()

Returns the column used to indicate the location of the well on the grid.

Specified by:

getColumn in interface Well

Returns:

See above.

getRow

public java.lang.Integer getRow()

Returns the row used to indicate the location of the well on the grid.

Specified by:

getRow in interface Well

Returns:

See above.

getStatus

public java.lang.String getStatus()

Returns the status of the well.

Specified by:

getStatus in interface Well

Returns:

See above.

setStatus

public void setStatus(java.lang.String status)

Sets the status of the well.

Specified by:

setStatus in interface Well

Parameters:

status - The status of the well.

getWellType

public java.lang.String getWellType()

Returns a human-readable identifier for the screening status e.g. empty, positive control, etc.

Specified by:

getWellType in interface Well

Returns:

See above.

setWellType

public void setWellType(java.lang.String type)

Sets a human-readable identifier for the screening status e.g. empty, positive control, etc.

Specified by:

setWellType in interface Well

Parameters:

type - The value to set.

getRed

public int getRed()

Returns the red component of the color associated to the well, or -1.

Specified by:

getRed in interface Well

Returns:

See above.

setRed

public void setRed(java.lang.Integer red)

Sets the red component of the color associated to the well.

Specified by:

setRed in interface Well

Parameters:

red - The value to set.

getGreen

public int getGreen()

Returns the green component of the color associated to the well, or -1.

Specified by:

getGreen in interface Well

Returns:

See above.

setGreen

public void setGreen(java.lang.Integer green)

Sets the green component of the color associated to the well.

Specified by:

setGreen in interface Well

Parameters:

green - The value to set.

getBlue

public int getBlue()

Returns the blue component of the color associated to the well, or -1.

Specified by:

getBlue in interface Well

Returns:

See above.

setBlue

public void setBlue(java.lang.Integer blue)

Sets the blue component of the color associated to the well.

Specified by:

setBlue in interface Well

Parameters:

blue - The value to set.

getAlpha

public int getAlpha()

Returns the alpha component of the color associated to the well, or -1.

Specified by:

getAlpha in interface Well

Returns:

See above.

setAlpha

public void setAlpha(java.lang.Integer alpha)

Sets the alpha component of the color associated to the well.

Specified by:

setAlpha in interface Well

Parameters:

alpha - The value to set.

reload

public void reload(Browser browser)
            throws ServiceException,
                   AccessException,
                   java.util.concurrent.ExecutionException

Reloads the well from OMERO.

Specified by:

reload in interface Well

Parameters:

browser - The data browser.

Throws:

ServiceException - Cannot connect to OMERO.

AccessException - Cannot access data.

java.util.concurrent.ExecutionException - A Facility can't be retrieved or instantiated.