Package fr.igred.omero

Class RepositoryObjectWrapper<T extends DataObject>

java.lang.Object

fr.igred.omero.ObjectWrapper<T>

fr.igred.omero.AnnotatableWrapper<T>

fr.igred.omero.RepositoryObjectWrapper<T>

Type Parameters:

T - Subclass of DataObject

All Implemented Interfaces:

Annotatable, RemoteObject, RepositoryObject

Direct Known Subclasses:

DatasetWrapper, FolderWrapper, ImageWrapper, PlateAcquisitionWrapper, PlateWrapper, ProjectWrapper, ScreenWrapper, WellWrapper

public abstract class RepositoryObjectWrapper<T extends DataObject>
extends AnnotatableWrapper<T>
implements RepositoryObject

Generic class containing a DataObject (or a subclass) object.

Field Summary

Fields inherited from class fr.igred.omero.ObjectWrapper

data

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	RepositoryObjectWrapper(T o)	Constructor of the class RepositoryObjectWrapper.

Method Summary

Modifier and Type	Method	Description
protected static java.util.List<java.lang.Long>	importImage(ConnectionHandler client, DataObject target, java.lang.String path)	Imports one image file to the target in OMERO.
protected static boolean	importImages(ConnectionHandler client, DataObject target, java.lang.String... paths)	Imports all images candidates in the paths to the target in OMERO.

Methods inherited from class fr.igred.omero.AnnotatableWrapper

addAndReplaceFile, addAndReplaceTable, addKeyValuePair, addTag, addTag, annotationLinkType, getAnnotations, getFileAnnotations, getMapAnnotations, getMyRating, getTable, getTags, rate, removeLink, unlink

Methods inherited from class fr.igred.omero.ObjectWrapper

asDataObject, canAnnotate, canChgrp, canChown, canDelete, canEdit, canLink, getCreated, getGroupId, getId, getOwner, saveAndUpdate, toString, wrap, wrap

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface fr.igred.omero.Annotatable

addAndReplaceFile, addAndReplaceFile, addAndReplaceTable, addAndReplaceTable, addFile, addKeyValuePair, addTable, addTag, addTag, addTags, copyAnnotationLinks, getAnnotationData, getAnnotations, getFileAnnotations, getKeyValuePairs, getMapAnnotations, getMyRating, getTable, getTables, getTags, getValues, isLinked, link, link, linkIfNotLinked, rate, unlink

Methods inherited from interface fr.igred.omero.RemoteObject

asDataObject, canAnnotate, canChgrp, canChown, canDelete, canEdit, canLink, getCreated, getGroupId, getId, getOwner, saveAndUpdate

Methods inherited from interface fr.igred.omero.RepositoryObject

getDescription, getName

Constructor Detail

RepositoryObjectWrapper

protected RepositoryObjectWrapper(T o)

Constructor of the class RepositoryObjectWrapper.

Parameters:

o - The DataObject to wrap in the RepositoryObjectWrapper.

Method Detail

importImages

protected static boolean importImages(ConnectionHandler client,
                                      DataObject target,
                                      java.lang.String... paths)
                               throws ServiceException,
                                      ServerException,
                                      java.io.IOException

Imports all images candidates in the paths to the target in OMERO.

Parameters:

client - The client handling the connection.

target - The import target.

paths - Paths to the image files on the computer.

Returns:

If the import did not exit because of an error.

Throws:

ServiceException - Cannot connect to OMERO.

ServerException - Server error.

java.io.IOException - Cannot read file.

importImage

protected static java.util.List<java.lang.Long> importImage(ConnectionHandler client,
                                                            DataObject target,
                                                            java.lang.String path)
                                                     throws ServiceException,
                                                            ServerException

Imports one image file to the target in OMERO.

Parameters:

client - The client handling the connection.

target - The import target.

path - Path to the image file on the computer.

Returns:

The list of IDs of the newly imported images.

Throws:

ServiceException - Cannot connect to OMERO.

ServerException - Server error.