Uses of Interface
fr.igred.omero.client.DataManager

Packages that use DataManager

Package	Description
fr.igred.omero	This package contains the main interfaces and abstract classes to handle OME Remote Objects.
fr.igred.omero.annotations	This package contains interfaces and classes for handling annotations.
fr.igred.omero.client	This package contains the client interfaces used to interact with an OMERO server and a class implementing them.
fr.igred.omero.containers	This package contains interfaces and classes related to the hierarchical organization for images, e.g. containers (projects, datasets and folders).
fr.igred.omero.core	This package contains interfaces and classes to handle images and their content, such as pixels, channels or planes.
fr.igred.omero.roi	This package contains wrapper classes for OMERO shapes and ROIs.
fr.igred.omero.screen	This package contains interfaces and classes related to the HCS organization, such as screens, plates or wells.

Uses of DataManager in fr.igred.omero

Methods in fr.igred.omero with parameters of type DataManager

Modifier and Type	Method and Description
default long	Annotatable.addFile(DataManager dm, File file) Uploads a file and links it to the object
default long	Annotatable.addFile(DataManager dm, File file) Uploads a file and links it to the object
void	Annotatable.addKeyValuePair(DataManager dm, String key, String value) Adds a single Key-Value pair to the object.
void	AnnotatableWrapper.addKeyValuePair(DataManager dm, String key, String value) Adds a single Key-Value pair to the object.
void	AnnotatableWrapper.addKeyValuePair(DataManager dm, String key, String value) Adds a single Key-Value pair to the object.
void	Annotatable.addKeyValuePair(DataManager dm, String key, String value) Adds a single Key-Value pair to the object.
default void	Annotatable.addTable(DataManager dm, Table table) Adds a table to the object in OMERO.
default void	Annotatable.addTable(DataManager dm, Table table) Adds a table to the object in OMERO.
void	Annotatable.addTag(DataManager dm, Long id) Adds a tag to the object in OMERO, if possible.
void	AnnotatableWrapper.addTag(DataManager dm, Long id) Adds a tag to the object in OMERO, if possible.
void	AnnotatableWrapper.addTag(DataManager dm, Long id) Adds a tag to the object in OMERO, if possible.
void	Annotatable.addTag(DataManager dm, Long id) Adds a tag to the object in OMERO, if possible.
void	Annotatable.addTag(DataManager dm, String name, String description) Adds a newly created tag to the object in OMERO, if possible.
void	AnnotatableWrapper.addTag(DataManager dm, String name, String description) Adds a newly created tag to the object in OMERO, if possible.
void	AnnotatableWrapper.addTag(DataManager dm, String name, String description) Adds a newly created tag to the object in OMERO, if possible.
void	Annotatable.addTag(DataManager dm, String name, String description) Adds a newly created tag to the object in OMERO, if possible.
default void	Annotatable.addTags(DataManager dm, Long... ids) Adds multiple tags by ID to the object in OMERO, if possible.
default void	Annotatable.addTags(DataManager dm, Long... ids) Adds multiple tags by ID to the object in OMERO, if possible.
Table	Annotatable.getTable(DataManager dm, Long fileId) Gets a certain table linked to the object in OMERO.
Table	AnnotatableWrapper.getTable(DataManager dm, Long fileId) Gets a certain table linked to the object in OMERO.
Table	AnnotatableWrapper.getTable(DataManager dm, Long fileId) Gets a certain table linked to the object in OMERO.
Table	Annotatable.getTable(DataManager dm, Long fileId) Gets a certain table linked to the object in OMERO.
default List<Table>	Annotatable.getTables(DataManager dm) Gets all tables linked to the object in OMERO.
default List<Table>	Annotatable.getTables(DataManager dm) Gets all tables linked to the object in OMERO.
default <A extends Annotation> void	Annotatable.link(DataManager dm, A annotation) Adds an annotation to the object in OMERO, if possible.
default <A extends Annotation> void	Annotatable.link(DataManager dm, A annotation) Adds an annotation to the object in OMERO, if possible.
default <A extends AnnotationData> void	Annotatable.link(DataManager dm, A annotation) Attach an AnnotationData to this object.
default <A extends AnnotationData> void	Annotatable.link(DataManager dm, A annotation) Attach an AnnotationData to this object.
default void	Annotatable.link(DataManager dm, Annotation... annotations) Adds multiple annotations to the object in OMERO, if possible.
default void	Annotatable.link(DataManager dm, Annotation... annotations) Adds multiple annotations to the object in OMERO, if possible.
void	ObjectWrapper.saveAndUpdate(DataManager dm) Saves and updates object.
void	RemoteObject.saveAndUpdate(DataManager dm) Saves and updates object.
void	RemoteObject.saveAndUpdate(DataManager dm) Saves and updates object.
void	ObjectWrapper.saveAndUpdate(DataManager dm) Saves and updates object.

Uses of DataManager in fr.igred.omero.annotations

Constructors in fr.igred.omero.annotations with parameters of type DataManager

Constructor and Description
TagAnnotationWrapper(DataManager dm, String name, String description) Constructor of the TagAnnotationWrapper class.
TagAnnotationWrapper(DataManager dm, String name, String description) Constructor of the TagAnnotationWrapper class.

Uses of DataManager in fr.igred.omero.client

Subinterfaces of DataManager in fr.igred.omero.client

Modifier and Type	Interface and Description
interface	Client Client interface to connect to OMERO, browse through all the data accessible to the user and modify it.

Classes in fr.igred.omero.client that implement DataManager

Modifier and Type	Class and Description
class	GatewayWrapper Allows the user to connect to OMERO and browse through all the data accessible to the user.

Uses of DataManager in fr.igred.omero.containers

Methods in fr.igred.omero.containers with parameters of type DataManager

Modifier and Type	Method and Description
default Dataset	Project.addDataset(DataManager dm, Dataset dataset) Adds a dataset to the project in OMERO.
default Dataset	Project.addDataset(DataManager dm, Dataset dataset) Adds a dataset to the project in OMERO.
Dataset	Project.addDataset(DataManager dm, String name, String description) Creates a dataset and adds it to the project in OMERO. .
Dataset	ProjectWrapper.addDataset(DataManager dm, String name, String description) Creates a dataset and adds it to the project in OMERO. .
Dataset	ProjectWrapper.addDataset(DataManager dm, String name, String description) Creates a dataset and adds it to the project in OMERO. .
Dataset	Project.addDataset(DataManager dm, String name, String description) Creates a dataset and adds it to the project in OMERO. .
default void	Dataset.addImage(DataManager dm, Image image) Adds a single image to the dataset in OMERO
default void	Dataset.addImage(DataManager dm, Image image) Adds a single image to the dataset in OMERO
default void	Folder.addImages(DataManager dm, Image... images) Links images to the folder in OMERO.
default void	Folder.addImages(DataManager dm, Image... images) Links images to the folder in OMERO.
default void	Dataset.addImages(DataManager dm, Iterable<? extends Image> images) Adds multiple images to the dataset in OMERO.
default void	Dataset.addImages(DataManager dm, Iterable<? extends Image> images) Adds multiple images to the dataset in OMERO.
default void	Folder.addROIs(DataManager dm, Image image, ROI... rois) Adds ROIs to the folder and associate them to the provided image.
default void	Folder.addROIs(DataManager dm, Image image, ROI... rois) Adds ROIs to the folder and associate them to the provided image.
default void	Folder.addROIs(DataManager dm, long imageId, ROI... rois) Adds ROIs to the folder and associate them to the provided image ID.
default void	Folder.addROIs(DataManager dm, long imageId, ROI... rois) Adds ROIs to the folder and associate them to the provided image ID.
default List<ROI>	Folder.getROIs(DataManager dm, Image image) Gets the ROIs contained in the folder associated with the provided image.
default List<ROI>	Folder.getROIs(DataManager dm, Image image) Gets the ROIs contained in the folder associated with the provided image.
List<ROI>	Folder.getROIs(DataManager dm, long imageId) Gets the ROIs contained in the folder associated with the provided image ID.
List<ROI>	FolderWrapper.getROIs(DataManager dm, long imageId) Gets the ROIs contained in the folder associated with the provided image ID.
List<ROI>	FolderWrapper.getROIs(DataManager dm, long imageId) Gets the ROIs contained in the folder associated with the provided image ID.
List<ROI>	Folder.getROIs(DataManager dm, long imageId) Gets the ROIs contained in the folder associated with the provided image ID.
default <A extends AnnotationData> void	Folder.link(DataManager dm, A annotation) Attach an AnnotationData to this object.
default <A extends AnnotationData> void	Folder.link(DataManager dm, A annotation) Attach an AnnotationData to this object.
void	Folder.unlinkAllROIs(DataManager dm) Unlink all ROIs associated to this folder.
void	FolderWrapper.unlinkAllROIs(DataManager dm) Unlink all ROIs associated to this folder.
void	FolderWrapper.unlinkAllROIs(DataManager dm) Unlink all ROIs associated to this folder.
void	Folder.unlinkAllROIs(DataManager dm) Unlink all ROIs associated to this folder.
default void	Folder.unlinkAllROIs(DataManager dm, Image image) Unlink all ROIs associated to the provided image from the folder.
default void	Folder.unlinkAllROIs(DataManager dm, Image image) Unlink all ROIs associated to the provided image from the folder.
default void	Folder.unlinkAllROIs(DataManager dm, long imageId) Unlink all ROIs associated to the provided image ID from the folder.
default void	Folder.unlinkAllROIs(DataManager dm, long imageId) Unlink all ROIs associated to the provided image ID from the folder.
default void	Folder.unlinkROIs(DataManager dm, Collection<? extends ROI> rois) Unlink ROIs from the folder.
default void	Folder.unlinkROIs(DataManager dm, Collection<? extends ROI> rois) Unlink ROIs from the folder.
default void	Folder.unlinkROIs(DataManager dm, ROI... rois) Unlink ROIs from the folder.
default void	Folder.unlinkROIs(DataManager dm, ROI... rois) Unlink ROIs from the folder.

Constructors in fr.igred.omero.containers with parameters of type DataManager

Constructor and Description
FolderWrapper(DataManager dm, String name) Constructor of the FolderWrapper class.
FolderWrapper(DataManager dm, String name) Constructor of the FolderWrapper class.
ProjectWrapper(DataManager dm, String name, String description) Constructor of the ProjectWrapper class.
ProjectWrapper(DataManager dm, String name, String description) Constructor of the ProjectWrapper class.

Uses of DataManager in fr.igred.omero.core

Methods in fr.igred.omero.core with parameters of type DataManager

Modifier and Type	Method and Description
List<Folder>	Image.getROIFolders(DataManager dm) Gets the list of folders linked to the ROIs in this image.
List<Folder>	ImageWrapper.getROIFolders(DataManager dm) Gets the list of folders linked to the ROIs in this image.
List<Folder>	ImageWrapper.getROIFolders(DataManager dm) Gets the list of folders linked to the ROIs in this image.
List<Folder>	Image.getROIFolders(DataManager dm) Gets the list of folders linked to the ROIs in this image.
List<ROI>	Image.getROIs(DataManager dm) Gets all ROIs linked to the image in OMERO
List<ROI>	ImageWrapper.getROIs(DataManager dm) Gets all ROIs linked to the image in OMERO
List<ROI>	ImageWrapper.getROIs(DataManager dm) Gets all ROIs linked to the image in OMERO
List<ROI>	Image.getROIs(DataManager dm) Gets all ROIs linked to the image in OMERO
List<ROI>	Image.saveROIs(DataManager dm, Collection<? extends ROI> rois) Links ROIs to the image in OMERO.
List<ROI>	ImageWrapper.saveROIs(DataManager dm, Collection<? extends ROI> rois) Links ROIs to the image in OMERO.
List<ROI>	ImageWrapper.saveROIs(DataManager dm, Collection<? extends ROI> rois) Links ROIs to the image in OMERO.
List<ROI>	Image.saveROIs(DataManager dm, Collection<? extends ROI> rois) Links ROIs to the image in OMERO.
default List<ROI>	Image.saveROIs(DataManager dm, ROI... rois) Links ROIs to the image in OMERO.
default List<ROI>	Image.saveROIs(DataManager dm, ROI... rois) Links ROIs to the image in OMERO.

Uses of DataManager in fr.igred.omero.roi

Methods in fr.igred.omero.roi with parameters of type DataManager

Modifier and Type	Method and Description
default <A extends AnnotationData> void	ROI.link(DataManager dm, A annotation) Attach an AnnotationData to this object.
default <A extends AnnotationData> void	Shape.link(DataManager dm, A annotation) Attach an AnnotationData to this object.
default <A extends AnnotationData> void	Shape.link(DataManager dm, A annotation) Attach an AnnotationData to this object.
default <A extends AnnotationData> void	ROI.link(DataManager dm, A annotation) Attach an AnnotationData to this object.
void	ROI.saveROI(DataManager dm) Saves the ROI.
void	ROIWrapper.saveROI(DataManager dm) Saves the ROI.
void	ROIWrapper.saveROI(DataManager dm) Saves the ROI.
void	ROI.saveROI(DataManager dm) Saves the ROI.

Uses of DataManager in fr.igred.omero.screen

Methods in fr.igred.omero.screen with parameters of type DataManager

Modifier and Type	Method and Description
default <A extends AnnotationData> void	PlateAcquisition.link(DataManager dm, A annotation) Attach an AnnotationData to this object.
default <A extends AnnotationData> void	PlateAcquisition.link(DataManager dm, A annotation) Attach an AnnotationData to this object.

Constructors in fr.igred.omero.screen with parameters of type DataManager

Constructor and Description
ScreenWrapper(DataManager dm, String name, String description) Constructor of the ProjectWrapper class.
ScreenWrapper(DataManager dm, String name, String description) Constructor of the ProjectWrapper class.