fr.igred.omero.roi

Interface Shape

All Superinterfaces:

Annotatable, RemoteObject

All Known Subinterfaces:

Ellipse, Line, Mask, Point, Polygon, Polyline, Rectangle, Text

All Known Implementing Classes:

EllipseWrapper, LineWrapper, MaskWrapper, PointWrapper, PolygonWrapper, PolylineWrapper, RectangleWrapper, ShapeWrapper, TextWrapper

public interface Shape
extends Annotatable

Generic interface to handle Shape objects.

Method Summary

Modifier and Type	Method and Description
ShapeData	asDataObject() Returns a ShapeData corresponding to the handled object.
default Shape	createTransformedAWTShape() Returns a new Shape defined by the geometry of the specified Shape after it has been transformed by the transform.
Rectangle	getBoundingBox() Returns a new Rectangle corresponding to the bounding box of the shape, once the related AffineTransform has been applied.
int	getC() Gets the channel.
default String	getCZT() Returns the C,Z,T positions as a comma-delimited String.
Color	getFill() Gets ShapeData fill color.
double	getFontSize() Gets ShapeData font size.
Color	getStroke() Gets the ShapeData stroke color.
int	getT() Sets the time-point.
String	getText() Gets the text on the ShapeData.
int	getZ() Gets the z-section.
default <A extends AnnotationData> void	link(DataManager dm, A annotation) Attach an AnnotationData to this object.
void	setC(int c) Sets the channel.
default void	setCZT(int c, int z, int t) Sets the channel, z-section and time-point at once.
void	setFill(Color fillColour) Sets the ShapeData fill color.
void	setFontSize(double value) Sets ShapeData font size.
void	setStroke(Color strokeColour) Sets ShapeData stroke color.
void	setT(int t) Sets the time-point.
void	setText(String text) Sets the text on the ShapeData.
default void	setTransform(AffineTransform transform) Sets the transform from a AffineTransform.
void	setTransform(double a00, double a10, double a01, double a11, double a02, double a12) Sets the transform to the matrix specified by the 6 double precision values.
void	setZ(int z) Sets the z-section.
Shape	toAWTShape() Converts the shape to an Shape.
AffineTransform	toAWTTransform() Converts AffineTransform to AffineTransform.
Roi	toImageJ() Converts shape to ImageJ ROI.

Methods inherited from interface fr.igred.omero.Annotatable

addAndReplaceFile, addAndReplaceFile, addAndReplaceTable, addAndReplaceTable, addFile, addKeyValuePair, addTable, addTag, addTag, addTags, copyAnnotationLinks, getAnnotationData, getAnnotations, getFileAnnotations, getKeyValuePairs, getMapAnnotations, getMyRating, getTable, getTables, getTags, getValues, isLinked, link, link, linkIfNotLinked, rate, unlink

Methods inherited from interface fr.igred.omero.RemoteObject

canAnnotate, canChgrp, canChown, canDelete, canEdit, canLink, distinct, flatten, getCreated, getElementsOf, getGroupId, getId, getOwner, getUpdated, saveAndUpdate

Method Detail

asDataObject

ShapeData asDataObject()

Returns a ShapeData corresponding to the handled object.

Specified by:

asDataObject in interface RemoteObject

Returns:

See above.

getC

int getC()

Gets the channel.

Returns:

the channel. -1 if the shape applies to all channels of the image.

setC

void setC(int c)

Sets the channel.

Parameters:

c - the channel. Pass -1 to remove z value, i.e. shape applies to all channels of the image.

getZ

int getZ()

Gets the z-section.

Returns:

the z-section. -1 if the shape applies to all z-sections of the image.

setZ

void setZ(int z)

Sets the z-section.

Parameters:

z - the z-section. Pass -1 to remove z value, i.e. shape applies to all z-sections of the image.

getT

int getT()

Sets the time-point.

Returns:

the time-point. -1 if the shape applies to all time-points of the image.

setT

void setT(int t)

Sets the time-point.

Parameters:

t - the time-point. Pass -1 to remove t value, i.e. shape applies to all time-points of the image.

setCZT

default void setCZT(int c,
                    int z,
                    int t)

Sets the channel, z-section and time-point at once.

Parameters:

c - the channel. Pass -1 to remove z value, i.e. shape applies to all channels of the image.

z - the z-section. Pass -1 to remove z value, i.e. shape applies to all z-sections of the image.

t - the time-point. Pass -1 to remove t value, i.e. shape applies to all time-points of the image.

getCZT

default String getCZT()

Returns the C,Z,T positions as a comma-delimited String.

Returns:

See above.

getFontSize

double getFontSize()

Gets ShapeData font size.

Returns:

The font size (in typography points)

setFontSize

void setFontSize(double value)

Sets ShapeData font size.

Parameters:

value - The font size (in typography points)

getStroke

Color getStroke()

Gets the ShapeData stroke color.

Returns:

The stroke color

setStroke

void setStroke(Color strokeColour)

Sets ShapeData stroke color.

Parameters:

strokeColour - The stroke color

getFill

Color getFill()

Gets ShapeData fill color.

Returns:

The fill color

setFill

void setFill(Color fillColour)

Sets the ShapeData fill color.

Parameters:

fillColour - The fill color

getText

String getText()

Gets the text on the ShapeData.

Returns:

the text

setText

void setText(String text)

Sets the text on the ShapeData.

Parameters:

text - the text

toAWTShape

Shape toAWTShape()

Converts the shape to an Shape.

Returns:

The converted AWT Shape.

setTransform

void setTransform(double a00,
                  double a10,
                  double a01,
                  double a11,
                  double a02,
                  double a12)

Sets the transform to the matrix specified by the 6 double precision values.

Parameters:

a00 - the X coordinate scaling element of the 3x3 matrix

a10 - the Y coordinate shearing element of the 3x3 matrix

a01 - the X coordinate shearing element of the 3x3 matrix

a11 - the Y coordinate scaling element of the 3x3 matrix

a02 - the X coordinate translation element of the 3x3 matrix

a12 - the Y coordinate translation element of the 3x3 matrix

setTransform

default void setTransform(AffineTransform transform)

Sets the transform from a AffineTransform.

Parameters:

transform - A Java AffineTransform.

toAWTTransform

AffineTransform toAWTTransform()

Converts AffineTransform to AffineTransform.

Returns:

The converted affine transform.

createTransformedAWTShape

default Shape createTransformedAWTShape()

Returns a new Shape defined by the geometry of the specified Shape after it has been transformed by the transform.

Returns:

A new transformed Shape.

getBoundingBox

Rectangle getBoundingBox()

Returns a new Rectangle corresponding to the bounding box of the shape, once the related AffineTransform has been applied.

Returns:

The bounding box.

toImageJ

Roi toImageJ()

Converts shape to ImageJ ROI.

Returns:

An ImageJ ROI.

link

default <A extends AnnotationData> void link(DataManager dm,
                                             A annotation)
                                      throws ServiceException,
                                             AccessException,
                                             ExecutionException

Attach an AnnotationData to this object.

Specified by:

link in interface Annotatable

Type Parameters:

A - The type of the annotation.

Parameters:

dm - The data manager.

annotation - The AnnotationData.

Throws:

ServiceException - Cannot connect to OMERO.

AccessException - Cannot access data.

ExecutionException - A Facility can't be retrieved or instantiated.