fr.igred.omero.roi

Class MaskWrapper

java.lang.Object

fr.igred.omero.ObjectWrapper<T>

fr.igred.omero.AnnotatableWrapper<T>

fr.igred.omero.roi.ShapeWrapper<MaskData>

fr.igred.omero.roi.MaskWrapper

All Implemented Interfaces:

Annotatable, RemoteObject, Mask, Rectangular, Shape

public class MaskWrapper
extends ShapeWrapper<MaskData>
implements Mask

Class containing an MaskData.

Wraps function calls to the MaskData contained.

Field Summary

Fields inherited from class fr.igred.omero.roi.ShapeWrapper

ANNOTATION_LINK

Fields inherited from class fr.igred.omero.ObjectWrapper

data

Constructor Summary

Constructors

Constructor and Description
MaskWrapper() Constructor of the MaskWrapper class using a new empty MaskData.
MaskWrapper(double x, double y, double width, double height, byte[] mask) Constructor of the MaskWrapper class using a new MaskData.
MaskWrapper(MaskData mask) Constructor of the MaskWrapper class using a MaskData.

Method Summary

Modifier and Type	Method and Description
double	getHeight() Returns the height of the rectangular shape.
byte[]	getMask() Returns the mask as a byte array.
int[][]	getMaskAsBinaryArray() Returns the mask image.
String	getText() Gets the text on the ShapeData.
double	getWidth() Returns the width of the rectangular shape.
double	getX() Returns the x-coordinate of the rectangular shape.
double	getY() Returns the y coordinate of the rectangular shape.
void	setHeight(double height) Sets the height of the rectangular shape.
void	setMask(boolean[][] mask) Sets the mask
void	setMask(byte[] mask) Sets the mask image.
void	setMask(int[][] mask) Sets the mask
void	setText(String text) Sets the text on the ShapeData.
void	setWidth(double width) Sets width of the rectangular shape.
void	setX(double x) Sets the x-coordinate of the rectangular shape.
void	setY(double y) Sets the y-coordinate of the rectangular shape.
Roi	toImageJ() Converts shape to ImageJ ROI.

Methods inherited from class fr.igred.omero.roi.ShapeWrapper

annotationLinkType, copyFromIJRoi, copyToIJRoi, getBoundingBox, getC, getFill, getFontSize, getStroke, getT, getZ, setC, setFill, setFontSize, setStroke, setT, setTransform, setZ, toAWTTransform

Methods inherited from class fr.igred.omero.AnnotatableWrapper

addAndReplaceFile, addAndReplaceTable, addKeyValuePair, addTag, addTag, getAnnotations, getFileAnnotations, getMapAnnotations, getMyRating, getTable, getTags, rate, removeLink, unlink

Methods inherited from class fr.igred.omero.ObjectWrapper

asDataObject, canAnnotate, canChgrp, canChown, canDelete, canEdit, canLink, getCreated, getGroupId, getId, getOwner, getUpdated, saveAndUpdate, toString, wrap, wrap

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface fr.igred.omero.roi.Mask

asDataObject, toAWTShape

Methods inherited from interface fr.igred.omero.roi.Shape

createTransformedAWTShape, getBoundingBox, getC, getCZT, getFill, getFontSize, getStroke, getT, getZ, link, setC, setCZT, setFill, setFontSize, setStroke, setT, setTransform, setTransform, setZ, toAWTTransform

Methods inherited from interface fr.igred.omero.Annotatable

addAndReplaceFile, addAndReplaceFile, addAndReplaceTable, addAndReplaceTable, addFile, addKeyValuePair, addTable, addTag, addTag, addTags, copyAnnotationLinks, getAnnotationData, getAnnotations, getFileAnnotations, getKeyValuePairs, getMapAnnotations, getMyRating, getTable, getTables, getTags, getValues, isLinked, link, link, linkIfNotLinked, rate, unlink

Methods inherited from interface fr.igred.omero.RemoteObject

canAnnotate, canChgrp, canChown, canDelete, canEdit, canLink, distinct, flatten, getCreated, getElementsOf, getGroupId, getId, getOwner, getUpdated, saveAndUpdate

Methods inherited from interface fr.igred.omero.roi.Rectangular

getCoordinates, setCoordinates, setCoordinates

Constructor Detail

MaskWrapper

public MaskWrapper(MaskData mask)

Constructor of the MaskWrapper class using a MaskData.

Parameters:

mask - The MaskData to wrap.

MaskWrapper

public MaskWrapper()

Constructor of the MaskWrapper class using a new empty MaskData.

MaskWrapper

public MaskWrapper(double x,
                   double y,
                   double width,
                   double height,
                   byte[] mask)

Constructor of the MaskWrapper class using a new MaskData.

Parameters:

x - The x-coordinate of the top-left corner of the image.

y - The y-coordinate of the top-left corner of the image.

width - The width of the image.

height - The height of the image.

mask - The mask image.

Method Detail

getText

public String getText()

Gets the text on the ShapeData.

Specified by:

getText in interface Shape

Returns:

the text

setText

public void setText(String text)

Sets the text on the ShapeData.

Specified by:

setText in interface Shape

Parameters:

text - the text

getX

public double getX()

Returns the x-coordinate of the rectangular shape.

Specified by:

getX in interface Rectangular

Returns:

See above.

setX

public void setX(double x)

Sets the x-coordinate of the rectangular shape.

Specified by:

setX in interface Rectangular

Parameters:

x - See above.

getY

public double getY()

Returns the y coordinate of the rectangular shape.

Specified by:

getY in interface Rectangular

Returns:

See above.

setY

public void setY(double y)

Sets the y-coordinate of the rectangular shape.

Specified by:

setY in interface Rectangular

Parameters:

y - See above.

getWidth

public double getWidth()

Returns the width of the rectangular shape.

Specified by:

getWidth in interface Rectangular

Returns:

See above.

setWidth

public void setWidth(double width)

Sets width of the rectangular shape.

Specified by:

setWidth in interface Rectangular

Parameters:

width - See above.

getHeight

public double getHeight()

Returns the height of the rectangular shape.

Specified by:

getHeight in interface Rectangular

Returns:

See above.

setHeight

public void setHeight(double height)

Sets the height of the rectangular shape.

Specified by:

setHeight in interface Rectangular

Parameters:

height - See above.

getMaskAsBinaryArray

public int[][] getMaskAsBinaryArray()

Returns the mask image.

Specified by:

getMaskAsBinaryArray in interface Mask

Returns:

See above.

getMask

public byte[] getMask()

Returns the mask as a byte array.

Specified by:

getMask in interface Mask

Returns:

See above.

setMask

public void setMask(byte[] mask)

Sets the mask image.

Specified by:

setMask in interface Mask

Parameters:

mask - See above.

setMask

public void setMask(int[][] mask)

Sets the mask

Specified by:

setMask in interface Mask

Parameters:

mask - The binary mask (int[width][height])

setMask

public void setMask(boolean[][] mask)

Sets the mask

Specified by:

setMask in interface Mask

Parameters:

mask - The binary mask (boolean[width][height])

toImageJ

public Roi toImageJ()

Converts shape to ImageJ ROI.

Specified by:

toImageJ in interface Shape

Overrides:

toImageJ in class ShapeWrapper<MaskData>

Returns:

An ImageJ ROI.