fr.igred.omero.roi

Class ShapeWrapper<T extends ShapeData>

java.lang.Object

fr.igred.omero.ObjectWrapper<T>

fr.igred.omero.AnnotatableWrapper<T>

fr.igred.omero.roi.ShapeWrapper<T>

Type Parameters:

T - Subclass of ShapeData

All Implemented Interfaces:

Annotatable, RemoteObject, Shape

Direct Known Subclasses:

EllipseWrapper, LineWrapper, MaskWrapper, PointWrapper, PolygonWrapper, PolylineWrapper, RectangleWrapper, TextWrapper

public abstract class ShapeWrapper<T extends ShapeData>
extends AnnotatableWrapper<T>
implements Shape

Generic class containing a ShapeData (or a subclass) object.

Field Summary

Fields

Modifier and Type	Field and Description
static String	ANNOTATION_LINK Annotation link name for this type of object

Fields inherited from class fr.igred.omero.ObjectWrapper

data

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	ShapeWrapper(T s) Constructor of the ShapeWrapper class using a ShapeData.

Method Summary

Modifier and Type	Method and Description
protected String	annotationLinkType() Returns the type of annotation link for this object.
protected void	copyFromIJRoi(Roi ijRoi) Copies details from an ImageJ ROI (position, stroke color, stroke width).
protected void	copyToIJRoi(Roi ijRoi) Copies details to an ImageJ ROI (name, position, stroke color, fill color, stroke width).
Rectangle	getBoundingBox() Returns a new Rectangle corresponding to the bounding box of the shape, once the related AffineTransform has been applied.
int	getC() Gets the channel.
Color	getFill() Gets ShapeData fill color.
double	getFontSize() Gets ShapeData font size.
Color	getStroke() Gets the ShapeData stroke color.
int	getT() Sets the time-point.
int	getZ() Gets the z-section.
void	setC(int c) Sets the channel.
void	setFill(Color fillColour) Sets the ShapeData fill color.
void	setFontSize(double value) Sets ShapeData font size.
void	setStroke(Color strokeColour) Sets ShapeData stroke color.
void	setT(int t) Sets the time-point.
void	setTransform(double a00, double a10, double a01, double a11, double a02, double a12) Sets the transform to the matrix specified by the 6 double precision values.
void	setZ(int z) Sets the z-section.
AffineTransform	toAWTTransform() Converts AffineTransform to AffineTransform.
Roi	toImageJ() Converts shape to ImageJ ROI.

Methods inherited from class fr.igred.omero.AnnotatableWrapper

addAndReplaceFile, addAndReplaceTable, addKeyValuePair, addTag, addTag, getAnnotations, getFileAnnotations, getMapAnnotations, getMyRating, getTable, getTags, rate, removeLink, unlink

Methods inherited from class fr.igred.omero.ObjectWrapper

asDataObject, canAnnotate, canChgrp, canChown, canDelete, canEdit, canLink, getCreated, getGroupId, getId, getOwner, getUpdated, saveAndUpdate, toString, wrap, wrap

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface fr.igred.omero.roi.Shape

asDataObject, createTransformedAWTShape, getCZT, getText, link, setCZT, setText, setTransform, toAWTShape

Methods inherited from interface fr.igred.omero.Annotatable

addAndReplaceFile, addAndReplaceFile, addAndReplaceTable, addAndReplaceTable, addFile, addKeyValuePair, addTable, addTag, addTag, addTags, copyAnnotationLinks, getAnnotationData, getAnnotations, getFileAnnotations, getKeyValuePairs, getMapAnnotations, getMyRating, getTable, getTables, getTags, getValues, isLinked, link, link, linkIfNotLinked, rate, unlink

Methods inherited from interface fr.igred.omero.RemoteObject

canAnnotate, canChgrp, canChown, canDelete, canEdit, canLink, distinct, flatten, getCreated, getElementsOf, getGroupId, getId, getOwner, getUpdated, saveAndUpdate

Field Detail

ANNOTATION_LINK

public static final String ANNOTATION_LINK

Annotation link name for this type of object

See Also:

Constant Field Values

Constructor Detail

ShapeWrapper

protected ShapeWrapper(T s)

Constructor of the ShapeWrapper class using a ShapeData.

Parameters:

s - The shape.

Method Detail

copyFromIJRoi

protected void copyFromIJRoi(Roi ijRoi)

Copies details from an ImageJ ROI (position, stroke color, stroke width).

Parameters:

ijRoi - An ImageJ Roi.

copyToIJRoi

protected void copyToIJRoi(Roi ijRoi)

Copies details to an ImageJ ROI (name, position, stroke color, fill color, stroke width).

Parameters:

ijRoi - An ImageJ Roi.

getC

public int getC()

Gets the channel.

Specified by:

getC in interface Shape

Returns:

the channel. -1 if the shape applies to all channels of the image.

setC

public void setC(int c)

Sets the channel.

Specified by:

setC in interface Shape

Parameters:

c - the channel. Pass -1 to remove z value, i.e. shape applies to all channels of the image.

getZ

public int getZ()

Gets the z-section.

Specified by:

getZ in interface Shape

Returns:

the z-section. -1 if the shape applies to all z-sections of the image.

setZ

public void setZ(int z)

Sets the z-section.

Specified by:

setZ in interface Shape

Parameters:

z - the z-section. Pass -1 to remove z value, i.e. shape applies to all z-sections of the image.

getT

public int getT()

Sets the time-point.

Specified by:

getT in interface Shape

Returns:

the time-point. -1 if the shape applies to all time-points of the image.

setT

public void setT(int t)

Sets the time-point.

Specified by:

setT in interface Shape

Parameters:

t - the time-point. Pass -1 to remove t value, i.e. shape applies to all time-points of the image.

getFontSize

public double getFontSize()

Gets ShapeData font size.

Specified by:

getFontSize in interface Shape

Returns:

The font size (in typography points)

setFontSize

public void setFontSize(double value)

Sets ShapeData font size.

Specified by:

setFontSize in interface Shape

Parameters:

value - The font size (in typography points)

getStroke

public Color getStroke()

Gets the ShapeData stroke color.

Specified by:

getStroke in interface Shape

Returns:

The stroke color

setStroke

public void setStroke(Color strokeColour)

Sets ShapeData stroke color.

Specified by:

setStroke in interface Shape

Parameters:

strokeColour - The stroke color

getFill

public Color getFill()

Gets ShapeData fill color.

Specified by:

getFill in interface Shape

Returns:

The fill color

setFill

public void setFill(Color fillColour)

Sets the ShapeData fill color.

Specified by:

setFill in interface Shape

Parameters:

fillColour - The fill color

setTransform

public void setTransform(double a00,
                         double a10,
                         double a01,
                         double a11,
                         double a02,
                         double a12)

Sets the transform to the matrix specified by the 6 double precision values.

Specified by:

setTransform in interface Shape

Parameters:

a00 - the X coordinate scaling element of the 3x3 matrix

a10 - the Y coordinate shearing element of the 3x3 matrix

a01 - the X coordinate shearing element of the 3x3 matrix

a11 - the Y coordinate scaling element of the 3x3 matrix

a02 - the X coordinate translation element of the 3x3 matrix

a12 - the Y coordinate translation element of the 3x3 matrix

toAWTTransform

public AffineTransform toAWTTransform()

Converts AffineTransform to AffineTransform.

Specified by:

toAWTTransform in interface Shape

Returns:

The converted affine transform.

getBoundingBox

public Rectangle getBoundingBox()

Returns a new Rectangle corresponding to the bounding box of the shape, once the related AffineTransform has been applied.

Specified by:

getBoundingBox in interface Shape

Returns:

The bounding box.

toImageJ

public Roi toImageJ()

Converts shape to ImageJ ROI.

Specified by:

toImageJ in interface Shape

Returns:

An ImageJ ROI.

annotationLinkType

protected String annotationLinkType()

Returns the type of annotation link for this object.

Specified by:

annotationLinkType in class AnnotatableWrapper<T extends ShapeData>

Returns:

See above.