Package | Description |
---|---|
fr.igred.omero |
This package contains the main interfaces and abstract classes to handle OME Remote Objects.
|
fr.igred.omero.annotations |
This package contains interfaces and classes for handling annotations.
|
fr.igred.omero.client |
This package contains the client interfaces used to interact with an OMERO server and a class implementing them.
|
fr.igred.omero.util |
This package contains classes to handle 5D positions and boundaries as well as a utility class to check if the
library requirements are available, and another one to convert DataObjects to Wrapper objects.
|
Modifier and Type | Method and Description |
---|---|
default <A extends Annotation> |
Annotatable.isLinked(Browser browser,
A annotation)
Checks if a specific annotation is linked to the object.
|
default <A extends Annotation> |
Annotatable.isLinked(Browser browser,
A annotation)
Checks if a specific annotation is linked to the object.
|
default <A extends Annotation> |
Annotatable.link(DataManager dm,
A annotation)
Adds an annotation to the object in OMERO, if possible.
|
default <A extends Annotation> |
Annotatable.link(DataManager dm,
A annotation)
Adds an annotation to the object in OMERO, if possible.
|
<A extends Annotation> |
Annotatable.unlink(Client client,
A annotation)
Unlinks the given annotation from the current object.
|
<A extends Annotation> |
AnnotatableWrapper.unlink(Client client,
A annotation)
Unlinks the given annotation from the current object.
|
<A extends Annotation> |
AnnotatableWrapper.unlink(Client client,
A annotation)
Unlinks the given annotation from the current object.
|
<A extends Annotation> |
Annotatable.unlink(Client client,
A annotation)
Unlinks the given annotation from the current object.
|
Modifier and Type | Method and Description |
---|---|
List<Annotation> |
Annotatable.getAnnotations(Browser browser)
Retrieves annotations linked to the object (of known types).
|
List<Annotation> |
AnnotatableWrapper.getAnnotations(Browser browser)
Retrieves annotations linked to the object (of known types).
|
List<Annotation> |
AnnotatableWrapper.getAnnotations(Browser browser)
Retrieves annotations linked to the object (of known types).
|
List<Annotation> |
Annotatable.getAnnotations(Browser browser)
Retrieves annotations linked to the object (of known types).
|
Modifier and Type | Method and Description |
---|---|
default void |
Annotatable.link(DataManager dm,
Annotation... annotations)
Adds multiple annotations to the object in OMERO, if possible.
|
default void |
Annotatable.link(DataManager dm,
Annotation... annotations)
Adds multiple annotations to the object in OMERO, if possible.
|
default void |
Annotatable.linkIfNotLinked(Client client,
Annotation... annotations)
Adds multiple annotations to the object in OMERO if they are not already linked.
|
default void |
Annotatable.linkIfNotLinked(Client client,
Annotation... annotations)
Adds multiple annotations to the object in OMERO if they are not already linked.
|
Modifier and Type | Interface and Description |
---|---|
interface |
FileAnnotation
Interface to handle File Annotations on OMERO.
|
interface |
MapAnnotation
Interface to handle Map Annotations on OMERO.
|
interface |
RatingAnnotation
Interface to handle Rating Annotations on OMERO.
|
interface |
TagAnnotation
Interface to handle Tag Annotations on OMERO.
|
interface |
TextualAnnotation
Interface to handle Textual Annotations on OMERO.
|
Modifier and Type | Class and Description |
---|---|
class |
AnnotationWrapper<T extends AnnotationData>
Generic class containing an AnnotationData (or a subclass) object.
|
class |
FileAnnotationWrapper
Class containing a FileAnnotationData object.
|
class |
MapAnnotationWrapper
Class containing a MapAnnotationData, a MapAnnotationData contains a list of NamedValue(Key-Value pair).
|
class |
RatingAnnotationWrapper
Class containing a RatingAnnotationData object.
|
class |
TagAnnotationWrapper
Class containing a TagAnnotationData object.
|
class |
TextualAnnotationWrapper
Class containing a TextualAnnotationData object.
|
Modifier and Type | Method and Description |
---|---|
default List<Image> |
Browser.getImages(Annotation annotation)
Gets all images with the specified annotation from OMERO.
|
default List<Image> |
Browser.getImages(Annotation annotation)
Gets all images with the specified annotation from OMERO.
|
Modifier and Type | Method and Description |
---|---|
static <T extends AnnotationData,U extends Annotation> |
Wrapper.wrap(T object)
Converts (wraps) an AnnotationData object to an Annotation object.
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static <T extends AnnotationData,U extends Annotation> |
Wrapper.wrap(T object)
Converts (wraps) an AnnotationData object to an Annotation object.
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