Uses of Interface
fr.igred.omero.core.Image

Packages that use Image

Package	Description
fr.igred.omero.annotations	This package contains interfaces and classes for handling annotations.
fr.igred.omero.client	This package contains the client interfaces used to interact with an OMERO server and a class implementing them.
fr.igred.omero.containers	This package contains interfaces and classes related to the hierarchical organization for images, e.g. containers (projects, datasets and folders).
fr.igred.omero.core	This package contains interfaces and classes to handle images and their content, such as pixels, channels or planes.
fr.igred.omero.roi	This package contains wrapper classes for OMERO shapes and ROIs.
fr.igred.omero.screen	This package contains interfaces and classes related to the HCS organization, such as screens, plates or wells.

Uses of Image in fr.igred.omero.annotations

Methods in fr.igred.omero.annotations that return types with arguments of type Image

Modifier and Type	Method and Description
List<Image>	Annotation.getImages(Browser browser) Gets all images with this annotation from OMERO.
List<Image>	AnnotationWrapper.getImages(Browser browser) Gets all images with this annotation from OMERO.
List<Image>	AnnotationWrapper.getImages(Browser browser) Gets all images with this annotation from OMERO.
List<Image>	Annotation.getImages(Browser browser) Gets all images with this annotation from OMERO.

Uses of Image in fr.igred.omero.client

Methods in fr.igred.omero.client that return Image

Modifier and Type	Method and Description
default Image	Browser.getImage(Long id) Returns the image with the specified ID from OMERO.
default Image	Browser.getImage(Long id) Returns the image with the specified ID from OMERO.

Methods in fr.igred.omero.client that return types with arguments of type Image

Modifier and Type	Method and Description
default List<Image>	Browser.getImages() Gets all images owned by the current user.
default List<Image>	Browser.getImages() Gets all images owned by the current user.
default List<Image>	Browser.getImages(Annotation annotation) Gets all images with the specified annotation from OMERO.
default List<Image>	Browser.getImages(Annotation annotation) Gets all images with the specified annotation from OMERO.
default List<Image>	Browser.getImages(Long... ids) Gets the images with the specified ids from OMERO
default List<Image>	Browser.getImages(Long... ids) Gets the images with the specified ids from OMERO
default List<Image>	Browser.getImages(String name) Gets all images with a certain name from OMERO.
default List<Image>	Browser.getImages(String name) Gets all images with a certain name from OMERO.
default List<Image>	Browser.getImages(String projectName, String datasetName, String imageName) Gets all images with the name specified inside projects and datasets with the given names.
default List<Image>	Browser.getImages(String projectName, String datasetName, String imageName) Gets all images with the name specified inside projects and datasets with the given names.
default List<Image>	Browser.getImagesLike(String motif) Gets all images with a certain motif in their name from OMERO.
default List<Image>	Browser.getImagesLike(String motif) Gets all images with a certain motif in their name from OMERO.
default List<Image>	Browser.getImagesWithKey(String key) Gets all images with a certain key.
default List<Image>	Browser.getImagesWithKey(String key) Gets all images with a certain key.
default List<Image>	Browser.getImagesWithKeyValuePair(String key, String value) Gets all images with a certain key value pair from OMERO
default List<Image>	Browser.getImagesWithKeyValuePair(String key, String value) Gets all images with a certain key value pair from OMERO

Uses of Image in fr.igred.omero.containers

Methods in fr.igred.omero.containers that return types with arguments of type Image

Modifier and Type	Method and Description
List<Image>	Dataset.getImages() Gets all the images in the dataset (if it was properly loaded from OMERO).
List<Image>	DatasetWrapper.getImages() Gets all the images in the dataset (if it was properly loaded from OMERO).
List<Image>	Folder.getImages() Retrieves the images contained in this folder.
List<Image>	FolderWrapper.getImages() Retrieves the images contained in this folder.
List<Image>	FolderWrapper.getImages() Retrieves the images contained in this folder.
List<Image>	Folder.getImages() Retrieves the images contained in this folder.
List<Image>	DatasetWrapper.getImages() Gets all the images in the dataset (if it was properly loaded from OMERO).
List<Image>	Dataset.getImages() Gets all the images in the dataset (if it was properly loaded from OMERO).
List<Image>	Dataset.getImages(Browser browser) Gets all images in the dataset available from OMERO.
List<Image>	DatasetWrapper.getImages(Browser browser) Gets all images in the dataset available from OMERO.
default List<Image>	Folder.getImages(Browser browser) Retrieves the images contained in this folder.
List<Image>	Project.getImages(Browser browser) Gets all images in the project available from OMERO.
List<Image>	ProjectWrapper.getImages(Browser browser) Gets all images in the project available from OMERO.
List<Image>	ProjectWrapper.getImages(Browser browser) Gets all images in the project available from OMERO.
List<Image>	Project.getImages(Browser browser) Gets all images in the project available from OMERO.
default List<Image>	Folder.getImages(Browser browser) Retrieves the images contained in this folder.
List<Image>	DatasetWrapper.getImages(Browser browser) Gets all images in the dataset available from OMERO.
List<Image>	Dataset.getImages(Browser browser) Gets all images in the dataset available from OMERO.
default List<Image>	Dataset.getImages(Browser browser, String name) Gets all images in the dataset with a certain name from OMERO.
default List<Image>	Project.getImages(Browser browser, String name) Gets all images in the project with a certain name from OMERO.
default List<Image>	Project.getImages(Browser browser, String name) Gets all images in the project with a certain name from OMERO.
default List<Image>	Dataset.getImages(Browser browser, String name) Gets all images in the dataset with a certain name from OMERO.
default List<Image>	Project.getImages(Browser browser, String datasetName, String imageName) Gets all images with a certain name from datasets with the specified name inside this project on OMERO.
default List<Image>	Project.getImages(Browser browser, String datasetName, String imageName) Gets all images with a certain name from datasets with the specified name inside this project on OMERO.
default List<Image>	Dataset.getImagesLike(Browser browser, String motif) Gets all images in the dataset with a certain motif in their name from OMERO.
default List<Image>	Project.getImagesLike(Browser browser, String motif) Gets all images in the project with a certain motif in their name from OMERO.
default List<Image>	Project.getImagesLike(Browser browser, String motif) Gets all images in the project with a certain motif in their name from OMERO.
default List<Image>	Dataset.getImagesLike(Browser browser, String motif) Gets all images in the dataset with a certain motif in their name from OMERO.
default List<Image>	Dataset.getImagesTagged(Browser browser, Long tagId) Gets all images in the dataset tagged with a specified tag from OMERO.
default List<Image>	Project.getImagesTagged(Browser browser, Long tagId) Gets all images in the project tagged with a specified tag from OMERO.
default List<Image>	Project.getImagesTagged(Browser browser, Long tagId) Gets all images in the project tagged with a specified tag from OMERO.
default List<Image>	Dataset.getImagesTagged(Browser browser, Long tagId) Gets all images in the dataset tagged with a specified tag from OMERO.
default List<Image>	Dataset.getImagesTagged(Browser browser, TagAnnotation tag) Gets all images in the dataset tagged with a specified tag from OMERO.
default List<Image>	Project.getImagesTagged(Browser browser, TagAnnotation tag) Gets all images in the project tagged with a specified tag from OMERO.
default List<Image>	Project.getImagesTagged(Browser browser, TagAnnotation tag) Gets all images in the project tagged with a specified tag from OMERO.
default List<Image>	Dataset.getImagesTagged(Browser browser, TagAnnotation tag) Gets all images in the dataset tagged with a specified tag from OMERO.
default List<Image>	Dataset.getImagesWithKey(Browser browser, String key) Gets all images in the dataset with a certain key
default List<Image>	Project.getImagesWithKey(Browser browser, String key) Gets all images in the project with a certain key
default List<Image>	Project.getImagesWithKey(Browser browser, String key) Gets all images in the project with a certain key
default List<Image>	Dataset.getImagesWithKey(Browser browser, String key) Gets all images in the dataset with a certain key
default List<Image>	Dataset.getImagesWithKeyValuePair(Browser browser, String key, String value) Gets all images in the dataset with a certain key value pair from OMERO
default List<Image>	Project.getImagesWithKeyValuePair(Browser browser, String key, String value) Gets all images in the project with a certain key value pair from OMERO.
default List<Image>	Project.getImagesWithKeyValuePair(Browser browser, String key, String value) Gets all images in the project with a certain key value pair from OMERO.
default List<Image>	Dataset.getImagesWithKeyValuePair(Browser browser, String key, String value) Gets all images in the dataset with a certain key value pair from OMERO
default List<Image>	Dataset.replaceImages(Client client, Collection<? extends Image> oldImages, Image newImage) Replaces (and unlinks) a collection of images from this dataset by a new image, after copying their annotations and ROIs, and concatenating the descriptions (on new lines).
default List<Image>	Dataset.replaceImages(Client client, Collection<? extends Image> oldImages, Image newImage) Replaces (and unlinks) a collection of images from this dataset by a new image, after copying their annotations and ROIs, and concatenating the descriptions (on new lines).

Methods in fr.igred.omero.containers with parameters of type Image

Modifier and Type	Method and Description
default void	Dataset.addImage(DataManager dm, Image image) Adds a single image to the dataset in OMERO
default void	Dataset.addImage(DataManager dm, Image image) Adds a single image to the dataset in OMERO
default void	Folder.addImages(DataManager dm, Image... images) Links images to the folder in OMERO.
default void	Folder.addImages(DataManager dm, Image... images) Links images to the folder in OMERO.
default void	Folder.addROIs(DataManager dm, Image image, ROI... rois) Adds ROIs to the folder and associate them to the provided image.
default void	Folder.addROIs(DataManager dm, Image image, ROI... rois) Adds ROIs to the folder and associate them to the provided image.
default List<ROI>	Folder.getROIs(DataManager dm, Image image) Gets the ROIs contained in the folder associated with the provided image.
default List<ROI>	Folder.getROIs(DataManager dm, Image image) Gets the ROIs contained in the folder associated with the provided image.
void	Dataset.removeImage(Client client, Image image) Removes an image from the dataset in OMERO.
void	DatasetWrapper.removeImage(Client client, Image image) Removes an image from the dataset in OMERO.
void	DatasetWrapper.removeImage(Client client, Image image) Removes an image from the dataset in OMERO.
void	Dataset.removeImage(Client client, Image image) Removes an image from the dataset in OMERO.
default List<Image>	Dataset.replaceImages(Client client, Collection<? extends Image> oldImages, Image newImage) Replaces (and unlinks) a collection of images from this dataset by a new image, after copying their annotations and ROIs, and concatenating the descriptions (on new lines).
default List<Image>	Dataset.replaceImages(Client client, Collection<? extends Image> oldImages, Image newImage) Replaces (and unlinks) a collection of images from this dataset by a new image, after copying their annotations and ROIs, and concatenating the descriptions (on new lines).
default void	Folder.unlinkAllROIs(DataManager dm, Image image) Unlink all ROIs associated to the provided image from the folder.
default void	Folder.unlinkAllROIs(DataManager dm, Image image) Unlink all ROIs associated to the provided image from the folder.

Method parameters in fr.igred.omero.containers with type arguments of type Image

Modifier and Type	Method and Description
default void	Dataset.addImages(DataManager dm, Iterable<? extends Image> images) Adds multiple images to the dataset in OMERO.
default void	Dataset.addImages(DataManager dm, Iterable<? extends Image> images) Adds multiple images to the dataset in OMERO.
default List<Image>	Dataset.replaceImages(Client client, Collection<? extends Image> oldImages, Image newImage) Replaces (and unlinks) a collection of images from this dataset by a new image, after copying their annotations and ROIs, and concatenating the descriptions (on new lines).
default List<Image>	Dataset.replaceImages(Client client, Collection<? extends Image> oldImages, Image newImage) Replaces (and unlinks) a collection of images from this dataset by a new image, after copying their annotations and ROIs, and concatenating the descriptions (on new lines).

Uses of Image in fr.igred.omero.core

Classes in fr.igred.omero.core that implement Image

Modifier and Type	Class and Description
class	ImageWrapper Class containing an ImageData.

Methods in fr.igred.omero.core that return types with arguments of type Image

Modifier and Type	Method and Description
default List<Image>	Image.getFilesetImages(Browser browser) Returns the list of images sharing the same fileset as the current image.
default List<Image>	Image.getFilesetImages(Browser browser) Returns the list of images sharing the same fileset as the current image.

Uses of Image in fr.igred.omero.roi

Methods in fr.igred.omero.roi with parameters of type Image

Modifier and Type	Method and Description
void	ROI.setImage(Image image) Sets the image linked to the ROI.
void	ROIWrapper.setImage(Image image) Sets the image linked to the ROI.
void	ROIWrapper.setImage(Image image) Sets the image linked to the ROI.
void	ROI.setImage(Image image) Sets the image linked to the ROI.

Uses of Image in fr.igred.omero.screen

Methods in fr.igred.omero.screen that return Image

Modifier and Type	Method and Description
Image	WellSample.getImage() Returns the image related to that sample if any.
Image	WellSampleWrapper.getImage() Returns the image related to that sample if any.
Image	WellSampleWrapper.getImage() Returns the image related to that sample if any.
Image	WellSample.getImage() Returns the image related to that sample if any.

Methods in fr.igred.omero.screen that return types with arguments of type Image

Modifier and Type	Method and Description
default List<Image>	PlateAcquisition.getImages() Retrieves the images contained in the well samples.
default List<Image>	Well.getImages() Retrieves the images contained in this well.
default List<Image>	Well.getImages() Retrieves the images contained in this well.
default List<Image>	PlateAcquisition.getImages() Retrieves the images contained in the well samples.
default List<Image>	Plate.getImages(Browser browser) Returns the images contained in the wells of this plate.
default List<Image>	PlateAcquisition.getImages(Browser browser) Retrieves the images contained in the well samples from OMERO.
default List<Image>	Screen.getImages(Browser browser) Retrieves the images contained in this screen.
default List<Image>	Screen.getImages(Browser browser) Retrieves the images contained in this screen.
default List<Image>	PlateAcquisition.getImages(Browser browser) Retrieves the images contained in the well samples from OMERO.
default List<Image>	Plate.getImages(Browser browser) Returns the images contained in the wells of this plate.

Methods in fr.igred.omero.screen with parameters of type Image

Modifier and Type	Method and Description
void	WellSample.setImage(Image image) Sets the image linked to this well sample.
void	WellSampleWrapper.setImage(Image image) Sets the image linked to this well sample.
void	WellSampleWrapper.setImage(Image image) Sets the image linked to this well sample.
void	WellSample.setImage(Image image) Sets the image linked to this well sample.