Package | Description |
---|---|
fr.igred.omero |
This package contains the main interfaces and abstract classes to handle OME Remote Objects.
|
fr.igred.omero.annotations |
This package contains interfaces and classes for handling annotations.
|
fr.igred.omero.client |
This package contains the client interfaces used to interact with an OMERO server and a class implementing them.
|
fr.igred.omero.containers |
This package contains interfaces and classes related to the hierarchical organization for images,
e.g. containers (projects, datasets and folders).
|
fr.igred.omero.core |
This package contains interfaces and classes to handle images and their content, such as pixels, channels or planes.
|
fr.igred.omero.meta |
This package contains wrapper classes for users and groups.
|
fr.igred.omero.roi |
This package contains wrapper classes for OMERO shapes and ROIs.
|
fr.igred.omero.screen |
This package contains interfaces and classes related to the HCS organization, such as screens, plates or wells.
|
fr.igred.omero.util |
This package contains classes to handle 5D positions and boundaries as well as a utility class to check if the
library requirements are available, and another one to convert DataObjects to Wrapper objects.
|
Modifier and Type | Interface and Description |
---|---|
interface |
Annotatable
Interface to handle Annotatable Objects on OMERO.
|
interface |
RepositoryObject
Interface to handle Repository Objects on OMERO.
|
Modifier and Type | Class and Description |
---|---|
class |
AnnotatableWrapper<T extends DataObject>
Generic class containing an annotatable DataObject (or a subclass) object.
|
class |
ImportWrapper<T extends DataObject>
Generic class containing a DataObject (or a subclass) object.
|
class |
ObjectWrapper<T extends DataObject>
Generic class containing a DataObject (or a subclass) object.
|
Modifier and Type | Method and Description |
---|---|
static <T extends RemoteObject> |
RemoteObject.distinct(Collection<? extends T> objects)
Only keeps objects with different IDs in a collection.
|
static <T extends RemoteObject> |
RemoteObject.distinct(Collection<? extends T> objects)
Only keeps objects with different IDs in a collection.
|
static <T extends RemoteObject> |
RemoteObject.flatten(Collection<? extends Collection<? extends T>> lists)
Flattens a collection of collections and only keeps objects with different IDs.
|
static <T extends RemoteObject> |
RemoteObject.flatten(Collection<? extends Collection<? extends T>> lists)
Flattens a collection of collections and only keeps objects with different IDs.
|
static <U extends RemoteObject,V extends U> |
RemoteObject.getElementsOf(Collection<? extends U> collection,
Class<? extends V> clazz)
Gets a list of elements of the specified class from a collection of RemoteObjects.
|
static <U extends RemoteObject,V extends U> |
RemoteObject.getElementsOf(Collection<? extends U> collection,
Class<? extends V> clazz)
Gets a list of elements of the specified class from a collection of RemoteObjects.
|
static <U extends DataObject,V extends RemoteObject> |
ObjectWrapper.wrap(Collection<U> objects,
Function<? super U,? extends V> mapper)
Converts a DataObject list to a ObjectWrapper list, sorted by
sorter . |
static <U extends DataObject,V extends RemoteObject> |
ObjectWrapper.wrap(Collection<U> objects,
Function<? super U,? extends V> mapper)
Converts a DataObject list to a ObjectWrapper list, sorted by
sorter . |
static <U extends DataObject,V extends RemoteObject,W extends Comparable<W>> |
ObjectWrapper.wrap(Collection<U> objects,
Function<? super U,? extends V> mapper,
Function<? super V,? extends W> sorter)
Converts a DataObject list to an ObjectWrapper list, sorted by
sorter . |
static <U extends DataObject,V extends RemoteObject,W extends Comparable<W>> |
ObjectWrapper.wrap(Collection<U> objects,
Function<? super U,? extends V> mapper,
Function<? super V,? extends W> sorter)
Converts a DataObject list to an ObjectWrapper list, sorted by
sorter . |
Modifier and Type | Interface and Description |
---|---|
interface |
Annotation
Interface to handle Annotations on OMERO.
|
interface |
FileAnnotation
Interface to handle File Annotations on OMERO.
|
interface |
MapAnnotation
Interface to handle Map Annotations on OMERO.
|
interface |
RatingAnnotation
Interface to handle Rating Annotations on OMERO.
|
interface |
TagAnnotation
Interface to handle Tag Annotations on OMERO.
|
interface |
TextualAnnotation
Interface to handle Textual Annotations on OMERO.
|
Modifier and Type | Class and Description |
---|---|
class |
AnnotationWrapper<T extends AnnotationData>
Generic class containing an AnnotationData (or a subclass) object.
|
class |
FileAnnotationWrapper
Class containing a FileAnnotationData object.
|
class |
MapAnnotationWrapper
Class containing a MapAnnotationData, a MapAnnotationData contains a list of NamedValue(Key-Value pair).
|
class |
RatingAnnotationWrapper
Class containing a RatingAnnotationData object.
|
class |
TagAnnotationWrapper
Class containing a TagAnnotationData object.
|
class |
TextualAnnotationWrapper
Class containing a TextualAnnotationData object.
|
Modifier and Type | Method and Description |
---|---|
default void |
DataManager.delete(RemoteObject object)
Deletes an object from OMERO.
|
default void |
DataManager.delete(RemoteObject object)
Deletes an object from OMERO.
|
Modifier and Type | Method and Description |
---|---|
default void |
DataManager.delete(Collection<? extends RemoteObject> objects)
Deletes multiple objects from OMERO.
|
default void |
DataManager.delete(Collection<? extends RemoteObject> objects)
Deletes multiple objects from OMERO.
|
Modifier and Type | Interface and Description |
---|---|
interface |
Dataset
Interface to handle Datasets on OMERO.
|
interface |
Folder
Interface to handle Folders on OMERO.
|
interface |
Project
Interface to handle Projects on OMERO.
|
Modifier and Type | Class and Description |
---|---|
class |
DatasetWrapper
Class containing a DatasetData object.
|
class |
FolderWrapper
Class containing a FolderData object.
|
class |
ProjectWrapper
Class containing a ProjectData object.
|
Modifier and Type | Interface and Description |
---|---|
interface |
Channel
Interface to handle Channel information on OMERO.
|
interface |
Image
Interface to handle Images on OMERO.
|
interface |
Pixels
Interface to handle Pixels on OMERO.
|
interface |
PlaneInfo
Interface to handle PlaneInfo on OMERO.
|
Modifier and Type | Class and Description |
---|---|
class |
ChannelWrapper
Class containing a ChannelData object.
|
class |
ImageWrapper
Class containing an ImageData.
|
class |
PixelsWrapper
Class containing a PixelData object.
|
class |
PlaneInfoWrapper |
Modifier and Type | Interface and Description |
---|---|
interface |
Experimenter
Interface to handle Experimenters on OMERO.
|
interface |
Group
Interface to handle Groups on OMERO.
|
Modifier and Type | Class and Description |
---|---|
class |
ExperimenterWrapper
Class containing an ExperimenterData object.
|
class |
GroupWrapper
Class containing a GroupData object.
|
Modifier and Type | Interface and Description |
---|---|
interface |
Ellipse
Interface to handle Ellipse shapes on OMERO.
|
interface |
Line
Interface to handle Line shapes on OMERO.
|
interface |
Mask
Interface to handle Mask shapes on OMERO.
|
interface |
Point
Interface to handle Point shapes on OMERO.
|
interface |
Polygon
Interface to handle Polygon shapes on OMERO.
|
interface |
Polyline
Interface to handle Polyline shapes on OMERO.
|
interface |
Rectangle
Interface to handle Rectangle shapes on OMERO.
|
interface |
ROI
Interface to handle ROIs on OMERO.
|
interface |
Shape
Generic interface to handle Shape objects.
|
interface |
Text
Interface to handle Text shapes on OMERO.
|
Modifier and Type | Class and Description |
---|---|
class |
EllipseWrapper
Class containing an EllipseData.
|
class |
LineWrapper
Class containing an LineData.
|
class |
MaskWrapper
Class containing an MaskData.
|
class |
PointWrapper
Class containing an PointData.
|
class |
PolygonWrapper
Class containing an PolygonData.
|
class |
PolylineWrapper
Class containing an PolylineData.
|
class |
RectangleWrapper
Class containing an RectangleData.
|
class |
ROIWrapper
Class containing a ROIData object.
|
class |
ShapeWrapper<T extends ShapeData>
Generic class containing a ShapeData (or a subclass) object.
|
class |
TextWrapper
Class containing an TextData.
|
Modifier and Type | Interface and Description |
---|---|
interface |
Plate
Interface to handle Plates on OMERO.
|
interface |
PlateAcquisition
Interface to handle Plate Acquisitions on OMERO.
|
interface |
Screen
Interface to handle Screens on OMERO.
|
interface |
Well
Interface to handle Wells on OMERO.
|
interface |
WellSample
Interface to handle Well Samples on OMERO.
|
Modifier and Type | Class and Description |
---|---|
class |
PlateAcquisitionWrapper
Class containing a PlateAcquisitionData object.
|
class |
PlateWrapper
Class containing a PlateData object.
|
class |
ScreenWrapper
Class containing a ScreenData object.
|
class |
WellSampleWrapper
Class containing a WellSampleData object.
|
class |
WellWrapper
Class containing a WellData object.
|
Modifier and Type | Method and Description |
---|---|
static <T extends DataObject,U extends RemoteObject> |
Wrapper.wrap(T object)
Converts (wraps) a DataObject to a RemoteObject.
|
static <T extends DataObject,U extends RemoteObject> |
Wrapper.wrap(T object)
Converts (wraps) a DataObject to a RemoteObject.
|
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